| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1136 |
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| Symbol | |
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| ID | 7969658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1248745 |
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| End bp | 1250028 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791732 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_002943053 |
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| Protein GI | 239814143 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.451004 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGAACG CTTCCCTGCC CCTCCCGGGC CATCCCCACA TCGCGCACCG CGACGGCGCG
CTCCACGTCG AAGGCCTCGG ACTGGAGGCG CTCGCGCGCG AGCATGGCAC GCCGCTGTTC
GTCTATTCGA AGCAGTGGAT GCTCGACGCG CTGGCCGCCT ACCAGCGCGG CTTCGAGGGC
CGCAGCGCCC TGATCTGCTA TGCGATGAAG GCGAATTCGT CGCTCGGCGT GCTGCGCGTG
TTCGCCGAAG CCGGCTGCGG CTTCGACATC GTCTCGGGCG GAGAGCTGGC GCGCGTGCTG
GCGGTGGGCG CCGACCCGGC CAGGATCATC TTCTCGGGCG TGGGCAAGAC CCGCGCCGAA
ATGCGGCAGG CGCTGGCCGC CGGCATCGCC TGCTTCAACG TCGAGAGCGA AGCCGAGCTC
GACGTGCTCA ACGAAGTGGC ACTGGCCGAA GGGCGCCGCG CGCCCATCAG CATCCGCATC
AACCCGAACG TCGATCCAAA GACGCATCCC TACATTTCCA CCGGCCTCAA GGGCAACAAG
TTCGGCATCG CCCACGACCG CGCGGTCGAG GCCTACCGCC ATGCCGCCAG GCTGCCGGGG
CTCGAGGTGG TGGGTATCGA CTGCCATATC GGCTCGCAGA TCACCGAGGC CTCGCCCTAC
CTGGACGCCT GCGACCGGGT GCTCGACCTG GTCGAGGCCA TCGAGGCGGC CGGCGTGCCC
ATTCACCACC TCGACTTCGG CGGCGGCCTG GGCATCGACT ACAACGGCGA AGTGCCGCCC
AAGGCCGATG CGCTGTGGCA GCAGCTGCTC GCGCGGCTCG ATGCGCGCGG CTTCGGCCAG
CGCAAGCTCG TCATCGAGCC CGGCCGTTCG CTGGTCGGCA ATGCGGGCGT GTGCCTGACC
GAGGTGCTCT ACACCAAGCC GGGCGAAGAC AAGAATTTCT GCATCGTCGA TGCGGCCATG
AACGACCTGC CCCGCCCCGC GATGTACCAG GCGTTCCAGA AGATCGTGCC GCTGCGCATC
CGCGCCGGCG ATGCGCCCAC CTACGACGTG GTCGGCCCGG TCTGCGAAAG CGGCGACTGG
ATCGGCCGCG ACCGCGCGCT CAACGTGGTG TCCGGCGACC TGCTGGCGGT GCTGTCCGCC
GGTGCGTACT GCATGAGCAT GGCCAGCAAC TACAACACGC GCGGCCGTGC CGCCGAAGTG
CTGGTGAGCG GCCGGAGCGC CACGCTGATC CGCCGCCGCG AGACGATGGA AGACCAGCTG
CGCAGCGAGC GGATCGAGGG CTGA
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| Protein sequence | MTNASLPLPG HPHIAHRDGA LHVEGLGLEA LAREHGTPLF VYSKQWMLDA LAAYQRGFEG
RSALICYAMK ANSSLGVLRV FAEAGCGFDI VSGGELARVL AVGADPARII FSGVGKTRAE
MRQALAAGIA CFNVESEAEL DVLNEVALAE GRRAPISIRI NPNVDPKTHP YISTGLKGNK
FGIAHDRAVE AYRHAARLPG LEVVGIDCHI GSQITEASPY LDACDRVLDL VEAIEAAGVP
IHHLDFGGGL GIDYNGEVPP KADALWQQLL ARLDARGFGQ RKLVIEPGRS LVGNAGVCLT
EVLYTKPGED KNFCIVDAAM NDLPRPAMYQ AFQKIVPLRI RAGDAPTYDV VGPVCESGDW
IGRDRALNVV SGDLLAVLSA GAYCMSMASN YNTRGRAAEV LVSGRSATLI RRRETMEDQL
RSERIEG
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