Gene Vapar_1114 details

Gene Information

• Locus tag: Vapar_1114
• ID: 7969636
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1221573
• End bp: 1222244
• Gene Length: 672 bp
• Protein Length: 223 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791710
• Product: Transaldolase
• Protein accession: YP_002943031
• Protein GI: 239814121
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0176] Transaldolase
• TIGRFAM ID: [TIGR00875] fructose-6-phosphate aldolase, TalC/MipB family

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGAAG ACTTCCATCT GTACCTGGAC AGCGCCGACC TGTCTGAACT GAAGACTTGC 
CTGCCGCATC CGGTGGTGCA TGGCGTGACG ACCAACCCCA CGCTGCTCAA GCGCGCCGGC 
ATCGGCCGCG GCGAAGTGCC CGGTCTGCTG AAACGCTGCA TCGAACTGGG CGCACGCCAG 
GTGCAGGCCC AGGTGTATTC CAGCGAAGTC GACGGCATGC TCGAAGACGC GGCCGCCTTG 
CTCTCGCACT TCGACCGGGG CCAGCTGGTC GTGAAGATTC CCGCCACGCG CCAGGGCCTC 
GACGCCGGCG CGCGGCTCAT CGCGCAGGGC GTGCCCGTCA CCTGGACCGC CGTGTATGCG 
CCCGAGCAGG CCCACTTTGC CGCGCAGCTG GGCGCGGCCT ACGCGGCACC GTACCTCGGC 
CGGCTCGACG ATGCCGGCGT CAACGGGCTG GCGCTGATCG CGCAGATGCA GGCGCTGGTG 
GCGCTGCGGC CTTCGTCGGG CACGCGCCTG CTGGTCGCCA GCATCCGCTC GCGCGAGGCC 
TATCTTGCGT TGCTGGCGCT GGGCGTGGGC GCCATCACGA TTCCGCCGCG CCTCTTTGCC 
GAGCTGCTCG ACCACCCCGC CACGCTGGCC GCGGAGCGCG GCTTCCTGGC CGATGCGCGC 
GCCTTGCCCT GA 

 

Protein sequence

MTEDFHLYLD SADLSELKTC LPHPVVHGVT TNPTLLKRAG IGRGEVPGLL KRCIELGARQ 
VQAQVYSSEV DGMLEDAAAL LSHFDRGQLV VKIPATRQGL DAGARLIAQG VPVTWTAVYA 
PEQAHFAAQL GAAYAAPYLG RLDDAGVNGL ALIAQMQALV ALRPSSGTRL LVASIRSREA 
YLALLALGVG AITIPPRLFA ELLDHPATLA AERGFLADAR ALP