| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1092 |
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| Symbol | |
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| ID | 7969614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1196922 |
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| End bp | 1197833 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644791688 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943009 |
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| Protein GI | 239814099 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0825825 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CATTCGCCCG CTGGCTCGAC AGCGACGTCG GCTACAGCTT TCGCACCTCG
CCCGTGGCCA TGGCGGCGGC GCTCATTGCA CTGGCCTGCG TGTTCTGCGC GGTCTTTGCC
GGATGGGTGT CGCCGCACAA CCCCTTCGAC CTGGCGACGC TCGAGCTCGG CGATGCGCGC
CTGCCGCCGG CATGGAGCGC CGAAGGCTCT TCCAAGTACC TGCTGGGCAC CGACGACCAG
GGCCGCGACA TCCTTTCGGC CGTGATCTAC GGCGCACGCA TCTCGCTGAT CGTCGGCGTG
GTGTCGGTGG CGCTGTCGAT CACCGTGGGC GTGGTGCTCG GCCTCCTGGC CGGCTTCCTC
GGCGGCTGGC TCGATTCCTT CCTGATGCGC CTGTGCGACG TGATGCTGTC GTTTCCGCCG
ATCCTCGTGG CGCTGCTGAT TGCGGGCGTC GGCCGTGCGC TGTTTCCCAA TGCGCATGAG
TCGCTGGCCT TCGGCGTGCT CATCATTTCA ATCTCGCTGA CCGGCTGGGT GCAGTACGCG
CGCACGGTGC GCGGCTCCAC GCTGGTGGAG CGCAACAAGG AATACGTGCA GGCCGCGCGC
GTGACCGGCG TGGCGCCGCT GCGCATCATG CTGCGCCACG TGCTGCCCAA CGTGATGGGG
CCGGTGATGG TGCTGGCCAC CATCCAGGTC GCCACTGCGA TCATCACCGA GGCGACCTTG
TCGTTCCTCG GCGTCGGCGT GCCGCCGACT TCTCCTTCGC TGGGCACGCT GATCAGCATC
GGCAACCAGT ACCTGTTCTC GGGCGAGTGG TGGATCACCG TGTTCCCGGG CCTGATGCTG
GTGCTGATCG CGCTCAGCGT GAACCTGTTG GGCGACTGGC TGCGCGACGC ACTGAACCCG
CGCCTGCGCT GA
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| Protein sequence | MKKTFARWLD SDVGYSFRTS PVAMAAALIA LACVFCAVFA GWVSPHNPFD LATLELGDAR
LPPAWSAEGS SKYLLGTDDQ GRDILSAVIY GARISLIVGV VSVALSITVG VVLGLLAGFL
GGWLDSFLMR LCDVMLSFPP ILVALLIAGV GRALFPNAHE SLAFGVLIIS ISLTGWVQYA
RTVRGSTLVE RNKEYVQAAR VTGVAPLRIM LRHVLPNVMG PVMVLATIQV ATAIITEATL
SFLGVGVPPT SPSLGTLISI GNQYLFSGEW WITVFPGLML VLIALSVNLL GDWLRDALNP
RLR
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