| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1073 |
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| Symbol | |
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| ID | 7969595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1177157 |
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| End bp | 1179481 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644791669 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002942990 |
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| Protein GI | 239814080 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGC CACTGACTTC GCCCGGCAGC CGCCTCGCCG CCGTTGCACT CGCAGCGCAG
GTGCTGGTTG CCGCCACCTT GCTGCAGGCC GCGCCCGTGT TCGCACAGTC CGGCGATGCG
CCGCGCCGGG GCGAACCCAT CACGCTCAAC TTCGCCAACG CCGACATCGA GGCCGTGGCG
CGCACCATGG CGGTGGTCAC CGGCCGCGAC GTGGTGGTCG ACCCGCGCGT GAAGGGCACG
ATGAACCTGG TCACCGACCG CGCCATCGCG CCGGCCGCGG CGTTCAACCA GTTCGCTTCC
GCGCTGCGCC TGCAGGGCTT TGCGGTGGTG GAGGCCGAAG GGCTCTACAA GGTGGTGCCC
GAGGCCGACG CCAAGCTCCA GACCCAGACC GTCAATACCG CCACGCCCAG CGCCGGCTCG
GTGGCCGGCA ACCAGATCGT CACGCAGATC TTCAGGCTCA ACTACGAGTC GCCGAACAGC
CTGCTGCCGG TGCTGCGCCC GCTCATTCCG CCCAACAACA CAATCAACGT GAACCCGGGC
AACAACTCGC TCGTGATCAC CGACTACGCG GACAACATGC GCCGGCTGGC GCGCATCATC
GCGGCGCTCG ACGTGCCCAA TGCGTCGGAC ATCGAGGTGA TCCCGCTCAA GCATTCGATC
GCCACCGACA TGCTGCCGCT GATCACTCGG CTAGTCGACG GCAGCGGCTC GGGCGCCACG
CCGGGCGCCC CCGCGCCGGG TGTGGCCGAT GCGTCGTTCC GCACCACCTT GCTGGCCGAC
CCGCGCAGCA ATGCGCTGAT CCTGCGCGCG GCCAACCCGG CGCGCGCGGC GCTGGTGCGC
ACGCTGGTCG AGAAGCTCGA CCGCGCGCCC GCCGAAAGCA GCAACGGCGC GGCCGGCAAC
ATCTACGTGG TCTACCTGAA GAACGCCGAT GCGGTGCGGC TGGCGGCCAC GCTGCGCGCC
GCCATGGCGG CCAACCAGCT GCCCGGCACG CCGGGTGCCC CGGGCGCGGC CGGAGGCGGC
GGCGCGCCGC AGCAGCAGCA AGCCAACATT CCGCAGGCCA TGCAGCAGAC GAGCCTCAGC
GGCCAAGGCG GCGGCTCGGC GGCCGCCAAC GCGCCGCTCA ACAATGCCAA CCAGCCGTCG
ACCGGCGGAC AGATCCAGGC CGACCCGTCG ACCAACTCGC TGATCATCAC GGCGCCCGAG
CCGCAGTACC GCCAGATGCG CGCCGTGATC GACAAGCTCG ACGGCCGGCG CGCGCAGGTC
ATGATCGAGG CGCTGATCGT CGAGGTCAGC GCCAAGAAGG CCGCCAACTT CGGCGTGCAG
TGGCAGAGCG CGCTGGGCAA CAACGCGGTC ATCGGCACCA ATTCGAGCCT GGCCAGCGCC
AACATCCTGG CGCTGACGCA GGCGCTGGCC ACGCGCGACG TGGCCAACGT GCGGCCGTCG
TCGGGGCTGA ACCTCGGCAT TGCCGGCAAG ATCGGCGGCC AGTACATCCT GGGCGCGATC
GCGAACTTCT TCAACAGCGA CGGCGACGCC AACGTGCTCT CCACGCCCAA CCTGCTGACG
CTGGACAACG AGGAGGCCAA GATCGTGATC GGCCAGAACG TGCCCTTCGT CACGGGCCAG
TACGCCAGCA CCTCGGGCTC GGTGGGCATC AACCCGTTCA CCACGGTGGA GCGCAAGGAC
GTGGGCCTCA CGCTGCGCGT GCGCCCGACC ATCAACGAGA ACGGCACCGT GAAGATGACC
ATCTTCCAGG AGACCTCGAC CGTCGACGGC AACACCATCA ACAACCCCAA TGGCCCGACC
ACCAACAAGC GATCGATCGA ATCGAGCGTG CTGGTGGAAG ACGGCGGCCT GGTCATGCTC
GGCGGGCTGC TGTCGGACGA CTACGGCAAC ACGATCGAGA AGGTGCCGGT GGCGGGCGAC
ATCCCGGTGC TCGGCAACCT GTTCAAGAAC GAGATCCGCA CGCGCAACAA GAGCAACCTG
ATGATGTTCC TGCGCCCCGC GGTCATGCGC GACGGCGCCT CGACCGAAGC CTTTGCCTAC
GACCGCTACG ACGAGATCCG CGGCATGCAG CAGCGCACCC AGCCGAACAC CGACAACATC
ATGCTGCGCG GCGTGGATGC CGCCCCCGTG CTGCCGGAAG CCCCGCTGCC GCGCGCGGGT
GCCCGCGACA CCAGCAGCAA CGGCAACGGC AGCGACCGCA TCCAGGGCAC GCAGCTGATC
CCGCCGCCGC GCCCAGCCGC CGACACCCGC ACCCTGCGGC CGAGCCCGCT GCGCGGCGCG
CTGCCGCCCA CGGCCGATCC GACCAGCTCG CGCGAACTGC CCTGA
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| Protein sequence | MMKPLTSPGS RLAAVALAAQ VLVAATLLQA APVFAQSGDA PRRGEPITLN FANADIEAVA
RTMAVVTGRD VVVDPRVKGT MNLVTDRAIA PAAAFNQFAS ALRLQGFAVV EAEGLYKVVP
EADAKLQTQT VNTATPSAGS VAGNQIVTQI FRLNYESPNS LLPVLRPLIP PNNTINVNPG
NNSLVITDYA DNMRRLARII AALDVPNASD IEVIPLKHSI ATDMLPLITR LVDGSGSGAT
PGAPAPGVAD ASFRTTLLAD PRSNALILRA ANPARAALVR TLVEKLDRAP AESSNGAAGN
IYVVYLKNAD AVRLAATLRA AMAANQLPGT PGAPGAAGGG GAPQQQQANI PQAMQQTSLS
GQGGGSAAAN APLNNANQPS TGGQIQADPS TNSLIITAPE PQYRQMRAVI DKLDGRRAQV
MIEALIVEVS AKKAANFGVQ WQSALGNNAV IGTNSSLASA NILALTQALA TRDVANVRPS
SGLNLGIAGK IGGQYILGAI ANFFNSDGDA NVLSTPNLLT LDNEEAKIVI GQNVPFVTGQ
YASTSGSVGI NPFTTVERKD VGLTLRVRPT INENGTVKMT IFQETSTVDG NTINNPNGPT
TNKRSIESSV LVEDGGLVML GGLLSDDYGN TIEKVPVAGD IPVLGNLFKN EIRTRNKSNL
MMFLRPAVMR DGASTEAFAY DRYDEIRGMQ QRTQPNTDNI MLRGVDAAPV LPEAPLPRAG
ARDTSSNGNG SDRIQGTQLI PPPRPAADTR TLRPSPLRGA LPPTADPTSS RELP
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