| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1042 |
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| Symbol | |
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| ID | 7972013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1139657 |
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| End bp | 1140616 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791638 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002942959 |
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| Protein GI | 239814049 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.429419 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAACT ACAACCATTG GTTCATCCGC GCCCGCCTCA AGACGCGGCA GCTGCTCCTG
CTGGTGGCGC TGGCGGAGGA AGGCAACATC CACCGCGCGG CCCAGGTGCT CAACATGACC
CAGCCAGCGG CCTCCAAGCT GCTGAAGGAC CTGGAAGACG TGCTGGAGGT GCCGCTGTTC
GACCGGCTGC CGCGCGGCAT GCGGCCCACC TGGTACGGCG AAACCATGAT CCGCCATGCC
CGCGTGGCGC TGGCCAGCCT GAACCAGGCG CACGACGAAC TCACCGCGCT CAAGGCCGGC
CGCTTCGGCC AGGTGGGCGT GGGCGCCATC ACCGCGCCCG GCCTCACGCT GATGCCGCCC
GCGGTAGCGA TGGTGAAGCG CGAGCAGCCC GACCTGCGCG TGTCGCTCGA GATCGAAACG
AGTGCGGTGC TGATCGAGCG GCTCGAGCAG GGCAAGCTCG ACATCCTGGT GGCGCGGCTC
TTCGCCGAGC ACGACAAGTC GCAGCTGCGC TACGAAGCGC TGGCCGAGGA GCCGGTGTGC
GCGCTGGTGC GCCCGGGCCA TCCGCTCCTG GGCGTGAGCG GCCTCACGCT GCGCGACGTG
GTGGGCGCCG GCTGGATCGT GCCGCCCGCG GGCAGCGTGC TGCGCCACCG CTTCGAACTG
ATGTTCCAGG AGGAGGGCCT GGTGCCGCCG AACAACATCA TCGAGAGCTC GGCCCTGCTC
TTCATCACGC GCATGCTGCA GCAGAGCGAC ATGGTGGCCG TGCTCGCGAC CGACGTGGCG
CGCTACTACG CCGCGCACGG CATCGTGTCG CTGCTGCCGC TGGACATGCC CTGCCACATG
GACGCCTTCG GCATCATCAC GCGCACCGAC CGGCTGCTGT CGCCGGCGGC CAAGGTGATG
ATGAAGGCGC TGAAGACCGC GAGCCTCAGC GTCTACGGCC GCAAACTTGA AATGGACTGA
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| Protein sequence | MTNYNHWFIR ARLKTRQLLL LVALAEEGNI HRAAQVLNMT QPAASKLLKD LEDVLEVPLF
DRLPRGMRPT WYGETMIRHA RVALASLNQA HDELTALKAG RFGQVGVGAI TAPGLTLMPP
AVAMVKREQP DLRVSLEIET SAVLIERLEQ GKLDILVARL FAEHDKSQLR YEALAEEPVC
ALVRPGHPLL GVSGLTLRDV VGAGWIVPPA GSVLRHRFEL MFQEEGLVPP NNIIESSALL
FITRMLQQSD MVAVLATDVA RYYAAHGIVS LLPLDMPCHM DAFGIITRTD RLLSPAAKVM
MKALKTASLS VYGRKLEMD
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