| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0987 |
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| Symbol | |
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| ID | 7971958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1085936 |
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| End bp | 1086712 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791583 |
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| Product | trehalose-phosphatase |
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| Protein accession | YP_002942904 |
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| Protein GI | 239813994 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1877] Trehalose-6-phosphatase |
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| TIGRFAM ID | [TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTCCC AGTCGCCGCC TCCGTTGGGC CGAGATACCG CCCTCTTTCT CGACTTCGAC
GGCACGCTGG TCGCGCTCGC ACCCACCCCC GAGGCGATCG AGATTCCTCC CGCCCTGGCG
GGCCTGCTCG AAGACCTGCG CGACCAGCTC GGCGGCGCGC TGGCCGTGGT GTCGGGCCGC
CAGATCGATG CCATCGACCG CTTCCTCGCG CCGCTGCGCC TGCCCGCCGC GGGCGAGCAC
GGCGTGCAGC GGCGCGACGC GCAAGGCCGC ATGCAGGAGC AGCACGCGCC CGATCTCGCG
CCCATCCTGG ACATCGCCAA CGAGCTGGCC CGCGTGCATG AAGGCCTGCT GGTCGAGCGC
AAGCACGCAG CCATTGCGCT GCACTACCGG CTCGCACCGC AGCTGGAGGC CGTGTGCCGG
GACGCCATGT CGCGCGCCAT TGCGGGCCGG CCGCTGCTTG AGCTGCTGCA CGGCAAGTTC
GTGTTCGAGG TCAAGCCCAC CGGGGTCAAC AAGGGCATCG CCATCGAGGC CTTCATGACG
GAGGCGCCGT TCGCCGGGCG CCTGCCGGTC TTTGCCGGCG ACGACACCAC CGACGAGAGC
GGCTTCGCGG TGGTGCAGCC GCGCGGCGGC GTCGGCATCA AGGTCGGCTC GGGCCCGAGC
CTGGCGCTGC ACCGGCTCGA ATCGCCGCGC GCGGTGTTCG AATGGCTGGT GCAGCTGCGC
GACCAGCTGG CCGCGCCGGC CCACAAGAAA AACGAATCCC CGAGGAGCGA TGGATGA
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| Protein sequence | MSSQSPPPLG RDTALFLDFD GTLVALAPTP EAIEIPPALA GLLEDLRDQL GGALAVVSGR
QIDAIDRFLA PLRLPAAGEH GVQRRDAQGR MQEQHAPDLA PILDIANELA RVHEGLLVER
KHAAIALHYR LAPQLEAVCR DAMSRAIAGR PLLELLHGKF VFEVKPTGVN KGIAIEAFMT
EAPFAGRLPV FAGDDTTDES GFAVVQPRGG VGIKVGSGPS LALHRLESPR AVFEWLVQLR
DQLAAPAHKK NESPRSDG
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