| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0970 |
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| Symbol | |
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| ID | 7970145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1068160 |
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| End bp | 1069287 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644791566 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002942887 |
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| Protein GI | 239813977 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAA AGAACGCCAG GCCAGCCGCC GCCGGTGGCG CCCCCGCAGA CGGCGCGCCG
GCCGCGCTCG TCACGCTTGC CACCGCCGAG CGGCAGGACG TGCCGGTCAC GGTGCAGGTC
AACGGCAGCG TGGTGTCGCT CAACAGTGTC GATCTGCGGC CGCAGGTGAC CAACACCGTG
GCGGCGGTGC ACGTGAAGGA AGGGCAGTTC GTCAAGGAGG GCCAGCTGCT CTTCACGCTC
GACGACCGCA ACGACCAGGC CAACCTGGCC CGCGCCCGCG CCCAGCAAAA GCGCGACGAA
GCCACCCTGG CCGACCTCGA GCGCCAATAC AAGCGCAGCC AGGAACTGCT GGCGCAGAAC
TTCATTTCCA AGAGCGCCAC GGACGCCACG CTGTCGCAGC TGGAAGCGCA GCGCGCCGCG
GTGGCGGCCG ACCGCGCCGC GGTGCAATCG GCGCAGGTGG CGCTGGGCTA CGCCACGCTG
CGCGCGCCCA TTGCGGGGCG CATCGGGGCC GTGAACATCT ATCCCGGCAC GCTGGTGCAG
CCGACGCTGT CGCTGGTCAC CATCACGCAG CTCGATCCCA TCGCGGTGAG CTTCCCGGTG
CCGGAGGCCA ACCTGCAGGA CCTGCTGGCG GCGGCGCGCA GCCGGGCCAA GGTGGAGGCG
CTGGTCGTCG GACGCCGCGA GCCGCTCAGC GGCGTGCTCA ATTTCGTCGA CAACACGGTC
GATCCGCAGA TCGGCACGGT GCGCGCCAAG GCGGTGTTCG ACAACGCCGA CCAGAGCCTC
TGGCCGGGCC AGTTCGTCGG CACCCGGATC ACGGTTCGCA CGCTCTCCGG CGCCACGGTG
GTGCCGGCCG CGGCGCTCAT GATGCTGTCC GAGGGCGCTT CGCTCTACGT GGTCGACCAG
GCCATGAATG CCAAGCGCCG CAAGGTGCAG GTGCTCCACA CCTTCGGCAC CAAGGTGGCG
GTGAGCGGCG TCGAGCCGGG CGAGCAGGTG GTCATCGAGG GCAGCCAGAA CGTGCGCCCG
GGCGGCAAGG TCAGGGCCGA TAAAAAGGCC GCGCCGGCCG GTACCACCGG CGTCACGCCG
GGCAGTGCGG CCTCCTCGGA CACCCAGGCT CCCCGGGAAC GCGCATGA
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| Protein sequence | MAAKNARPAA AGGAPADGAP AALVTLATAE RQDVPVTVQV NGSVVSLNSV DLRPQVTNTV
AAVHVKEGQF VKEGQLLFTL DDRNDQANLA RARAQQKRDE ATLADLERQY KRSQELLAQN
FISKSATDAT LSQLEAQRAA VAADRAAVQS AQVALGYATL RAPIAGRIGA VNIYPGTLVQ
PTLSLVTITQ LDPIAVSFPV PEANLQDLLA AARSRAKVEA LVVGRREPLS GVLNFVDNTV
DPQIGTVRAK AVFDNADQSL WPGQFVGTRI TVRTLSGATV VPAAALMMLS EGASLYVVDQ
AMNAKRRKVQ VLHTFGTKVA VSGVEPGEQV VIEGSQNVRP GGKVRADKKA APAGTTGVTP
GSAASSDTQA PRERA
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