| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0940 |
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| Symbol | |
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| ID | 7970115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1033157 |
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| End bp | 1035001 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791536 |
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| Product | putative signal transduction histidine kinase |
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| Protein accession | YP_002942857 |
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| Protein GI | 239813947 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGGGC GGGCGGGCAG GGCTCTTGCC GCGCTGTGGC TCGCGGCAAC TCTGCTGCTG
GCAGCGCAGC CGGCGGCGGC CGCGGCGGCC GAGGGCACGA TCGAACTGCG CCGCGGCACC
GTGTGGACCA CCGTCGACGG CGCCACGCAC AAGGCGCCCG TCGAACTCTC CTACCACTGG
GACCGCCAGC ACGGCGGACG CCCCGGCTAC GCGACCTTCG AGCTGCCGTT CACGCTCGAC
GCCGAGCCCG AGGTGCCCTG GGGCATCTTC GTTCCGCGCG CCGGCAGCGT TCTGGAGGTC
TGGCTCAACG ACGCGCTGCT GCAGGTCTAT GGCGACCTCG CCAGCGGCAA CGGGCCGGAC
TACGCCAAGG CGCCGCTCTA CGTGCCGGTG CCGGGGCACC TGCTGAAGCC CGGCGAGAAC
CGCCTGCAGG TCCGCATACG CGCCGACAGC GCCCGCAGGG GCGGGCTGTC GCGCGTGACC
ATCGGGCCGG CGACACCGGT GCGCACCGAT CTCTTCGAAA GCGCCTATGC CTGGCGCTTC
ACCGGCTCGG TGCTCCTGAC CGCCTTCAGC CTGATCGTCG GCAGCATCGC GCTGGCGCTG
TGGCTCACGC AGGTGGATGC CGCCGCCACC GGATGGCGCC GGCGCGACAG CCTCTATTTC
TGGGCCGCGC TGGCCGAGTT CTGCTGGGCG ATCCGCGTGG CCGACGGCGT GATCGCCGAA
CCGCCGCTGC CCTGGGGCGC CTGGGGCGTG CTCATGGCCA CCTGCTATGC GGGCTGGGCC
ACGTCGGCCA TGATGTTCTG CTACCACCTC GCGGGCTGGC ACCGCCGCCC GCGCATGCGC
TGGCTGCGCT GGCCGATGGC CGGCGTGGTG CCCGGAACCG TGGTGGCCAC CGCCCTCGCG
CTTCACCGCG AGGAGCCCTA CTGGCTCACC GGCTGGCTCG CACTGGAGAT CGGGTTCGTC
GCGCTGTTCG TCGGCGCCTT TGCCGTGGCC ACCATCCGGC GGCCGAACGT GGGCCGCCTG
CTGGTGGCCG CCGCCGCGCT GGTGACGCTG GGCTTCGGCA CCCGCGACTG GCTCGTGATC
CGCCTGAGCG ACGCCTACGG CGAGACCACC TGGGTGCGCT ATTCCTCCGT GTTCTTCGGC
ATCGCGCTGC TCTTGATCGT GCTGCGGCGC TTCCATGCCG CGAGCGTGCA GGCGCGCGGC
TCGGTCGCGG CCCTGGCCGA GCGCGTGGCG CAGCGCGAAC GCGAACTCGC GTCCACCTTC
GCCGCGCTCG AGCAGGTGGC GCGCGACCAG GCGCGCACCC ACGAGCGCGA GCGCATCCTG
CGCGACATGC ACGACGGCGT GGGCTCGCAC ATCAGCTCGG CCATCCGTCA GCTGCAGTCG
GGCCAGGCGA GCCCCGAGGA ATTGCTGCGG ACGCTGTGCG ACTCGCTCGA CCAGCTCAAG
CTGGCGATCG ACTCCATCCA CCTGCCGCCG GGCGACGTCG GCGCGCTGCT GGCGGCGCTG
CGCTACCGGC TGGAGCCGCG GCTGGCGGCC GCGGGCATCC AGTTCGAGTG GGCGGTGGAC
GAGGTGCCCG ACGTGAAGCG GCTCGACGCG CAAGCCATGC GGCAATTGCA GTTCCTGCTG
TTCGAGGCGA TTTCCAACGT GCTGCAGCAT GCCCAGGCCC GGACGCTCAG GATCGAGGCC
GAAGCGCCGG CCGGCGCCGT GCAGCTGCGC GTGATCGACG ACGGCCAGGG CTTCGACGCG
CAGCAGGTGC CCAGGGCGCT GGCCGAGCGT GCCGCGGCCA TCGGCGCACG GCTGGCGCTC
GAAAGCCGAC CGGGGCGCAC GGTCGTTCAG CTCGGCTTCG CCTGA
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| Protein sequence | MFGRAGRALA ALWLAATLLL AAQPAAAAAA EGTIELRRGT VWTTVDGATH KAPVELSYHW
DRQHGGRPGY ATFELPFTLD AEPEVPWGIF VPRAGSVLEV WLNDALLQVY GDLASGNGPD
YAKAPLYVPV PGHLLKPGEN RLQVRIRADS ARRGGLSRVT IGPATPVRTD LFESAYAWRF
TGSVLLTAFS LIVGSIALAL WLTQVDAAAT GWRRRDSLYF WAALAEFCWA IRVADGVIAE
PPLPWGAWGV LMATCYAGWA TSAMMFCYHL AGWHRRPRMR WLRWPMAGVV PGTVVATALA
LHREEPYWLT GWLALEIGFV ALFVGAFAVA TIRRPNVGRL LVAAAALVTL GFGTRDWLVI
RLSDAYGETT WVRYSSVFFG IALLLIVLRR FHAASVQARG SVAALAERVA QRERELASTF
AALEQVARDQ ARTHERERIL RDMHDGVGSH ISSAIRQLQS GQASPEELLR TLCDSLDQLK
LAIDSIHLPP GDVGALLAAL RYRLEPRLAA AGIQFEWAVD EVPDVKRLDA QAMRQLQFLL
FEAISNVLQH AQARTLRIEA EAPAGAVQLR VIDDGQGFDA QQVPRALAER AAAIGARLAL
ESRPGRTVVQ LGFA
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