| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0935 |
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| Symbol | |
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| ID | 7970110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1027610 |
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| End bp | 1028467 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644791531 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_002942852 |
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| Protein GI | 239813942 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.867637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACCTGT ACTGCGTAAT GGGCAACCCG GTCGAGCACA GCCGCTCGCC GCGCATCCAT
GCCCGGTTTG CCGAACTCTG CGGCCAGCAG ATGGACTACA GCCGCCGGCT CGTTCCGGTC
GGCGCCTTTG CCGAAGGCGT GGCCGCCTTC CGCCGCGAAG CCGCCGAGCG CGGCGACACG
GCGCGCGGCT GCAACGTGAC CGTGCCCTTC AAGTTCGACG CCGCTGCGCT CGCGCAGCAC
ACCAGCGAGC GCGCCGTGCT TGCGCAGGCG GTGAACACGC TGCGCTTCGA AGCCGACGGC
AGCATCCACG CCGACAACAC CGACGGCATC GGGCTGGTCA ACGACATCGT GCGCAACGCC
GCCGTGCCGC TGGCGGGCCG CGAGCTGCTG CTGATCGGCG CGGGCGGCGC CGCGGCGGGC
GTGCTCGGGC CGCTGCTGGA CGCCGGCGCC GCGCGCATCG TGGTGGCCAA CCGCACGGTC
GGCAAGGCCA TGGCGCTGGT GCAGCGCCAT GCGGCATTGG CGCTGCGCCA CGGCGCGGTA
CTCGAAGCCT GGGCGCTCGA CGAAGTGTCC GGCAATTTCG ACGTGGTGGT CAATGCCACG
GCCTCCAGCC TCGCGGGCGA TGCGGTGCCG GTGCGCGCGC AGGTGCTGCG CCCCGGCTCG
CTCGCGGTCG ACCTGATGTA CGGCCCCGCG GCCGCCGGCT TCATGGCCTG GGCCGAAGCG
CACGGCGCGG TGCCGCGCGA CGGGCTCGGC ATGCTGGTCG AACAGGCGGC CGAGGCCTTC
GAGATCTGGC GCGGCGTGCG CCCGCCCGGC GCGCAGGTGC TGGCCGAATT GCGCGCCTCG
CTCGCCGCCG GCCGATGA
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| Protein sequence | MDLYCVMGNP VEHSRSPRIH ARFAELCGQQ MDYSRRLVPV GAFAEGVAAF RREAAERGDT
ARGCNVTVPF KFDAAALAQH TSERAVLAQA VNTLRFEADG SIHADNTDGI GLVNDIVRNA
AVPLAGRELL LIGAGGAAAG VLGPLLDAGA ARIVVANRTV GKAMALVQRH AALALRHGAV
LEAWALDEVS GNFDVVVNAT ASSLAGDAVP VRAQVLRPGS LAVDLMYGPA AAGFMAWAEA
HGAVPRDGLG MLVEQAAEAF EIWRGVRPPG AQVLAELRAS LAAGR
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