| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0881 |
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| Symbol | |
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| ID | 7972097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 968010 |
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| End bp | 970376 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791478 |
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| Product | phospholipase C, phosphocholine-specific |
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| Protein accession | YP_002942799 |
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| Protein GI | 239813889 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3511] Phospholipase C |
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| TIGRFAM ID | [TIGR03396] phospholipase C, phosphocholine-specific, Pseudomonas-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACAC GCCGCAAGTT CCTCCAGACC GCCACCGGCT CCGGCATTGC CGCTGCCACG
CTGGCCACCT TTCCGCCCAG CATCCGCCGC GCGCTGGCCA TTCCCGCGCA CCACGAGACC
GGCACCATCA AGGACGTCAA GCACGTCGTG CTGCTGATGC AGGAGAACCG TTCCTTCGAC
AGCTATTTCG GCACCTTCAA GGGCGTGCGC GGCTACGGCG ACCGCTTTGC CGTGCCCGCG
CCCAACGGCA AGACCATCTT CCGCCAGACC TACACCAAGA CTACGCCGCC CAGCACCTAC
ACGCCCTACC GGCTCGACGA GAGCAAAGGC AACGCGCAGC GCGCGGGCAG CACGCCGCAC
GGCTGGTCCG ACTCGCAGGC CGCATGGGAC CACGGCCGCA TGTTCAAGTG GCCCGACGTC
AAGAACCTGC TGTCGATGGG CTACTACGAC ACCGCCGAGG TGCCGTTCCA GCGCGCGCTG
GCCGAGGCCT TCACGCTGTG CGACCACTAC CACTGCGGCA TGCACACCGG CACCATCGCG
AACCGCCTGT TCTACTGGAG CGGCACCAAT GGCCCGAACG GCATCAGCCC CGTCGACGGC
AGCAAGGTGC AGCTCGCGGT GCTCAACAAC CAGTTCAACG CCGGCAACGA CATTGGCGCA
TCCACCGAAG GCTGGACCTG GACCACCTAT GCCGACCGGC TCGAGAAGGC CGGCGTGAAG
TGGAAGGTCT ACCAGAGCCT GATCGACAAC TTCGGCTGCA ACGAGATGAT GGGCTTTCGC
CACTGGCGCA CCGCCATCGA GCAGATGCCG GCGGCGCGCC GCCCCGTGTA CGTTCCCGCG
ACCGACATCA CGCAGCCGGT GACCGCCGCC GGGCCGTTCT ACGACCCGGC CATCGACGAT
GCGCTCAGCC CGCTGGCCAA GGGCTTCGGC AACACCATGC CGCAGGGCTT TCTCGAAACC
TTCCGCGAGG ACATCCGCAA CGGCACCCTG CCCGCGGTGT CGTGGATCAT CTCGCCGTCG
GCCTACAGCG AGCATCCCGG CCCGTCGAGC CCGGCCAAGG GCGGCTGGTA CGTGCAGGAA
GTGCTGGACG CGCTGACCTC CAACCCCGAG GTCTGGAGCA AGACCGTGCT GCTCATCAAC
TTCGACGAGA ACGACGGTTT CTTCGACCAC CTGCCGTCGC CCGCGGTGCC GTCCCGCAAC
CCCGACGGTT CGCTGGCCGG CGCCACCACG CTGGCCGAGG CCGACACGGC CGTCGAGTAC
CACAACTACA CGCCGGCCAC GCCCAAGCAG CCCGCCATGG ACGGCCGCCC CTACGGCCCC
GGCCCGCGCG TGCCGATGTG GGTGGTCTCG CCCTGGAGCC GCGGCGGCTG GGTCAACTCG
CAGGTCTGCG ACCACACCTC CACGCTCATG TTCCTGGAGA AGTGCTTCGG CGTGGCCGAG
CCGCAGATCA GCAAGTACCG CCGTGCCGTC TGCAGCGACC TCACGAGTGC CTTCAACTTC
GAGCGCCCCA ACGACGAGCC GCTGCCCGTG CTGCCCGGCC GCAAGACCAA GGCCGAAGCC
GATGCGCTGA CCGCCGCGCA AGAGGCGCTG CCCAAGATCG TGCCGGCCGC CGATGCCGAG
CTGCCGGTGC AGGCCACCGG CGTGCGCCCC TCGCGCGCGC TGCCCTACGA GCTGCACACC
AGCGCGCGCA GCGATGCGCT CAACGGCCGC GTCCAGCTGC TGTTCGCCAA CAGCGGCCGC
GCCGCCGCCG TGTTCCACGT CTACGACAAG CTGCACCTGT CCGACCGCCT GCCGCGCCGC
TACGTGGTGG AGCCCGGCAA GCAGCTCGAC GGCCACTGGA ACGCCATGGC CGACGACGCC
GGCCTGTACG ACCTGTGGGT GCTCGGCCCC AACGGCTTTC ATCGCCAGTT CAAGGGCGAC
CTGAACCGGC TGCGCGCCGG CAGCGCGCCC GCGCCCGAGA TCCGCGTGGG CTACGACGCG
CGCCGCGGCG ACCTCTACCT GCAGATGCGC AACGACGGCC GGCGCGATTG CCGCTTCACC
GTGCAGCCCA ACAAGGCCTA CCCGCGCCCC GACGCCTACC AGGCCGGCGG CAGGGACCGC
AACGGCAACA ACGGCCATGG CAGCGATGGG CACGGCAATG GCGACAACGG CACCTACGGC
CACAACCCCG ACGGCTCGTG GAGCATCCGC GTCAAGGGCG GCGGCGAGAC CGGCATGCGC
TGGAGCCTGG ACGCGAGCGG CCAGTGGTAC GACTTCGTCG TGACCTGCGA TGCCGATCCT
TCCTTCTACC GGCGCCTGGC CGGCCGCATC GAAACCGGCC GGCATTCGGT GAGCGATCCG
GCCATGGGGC TGCAGGACCG CTTCTGA
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| Protein sequence | MTTRRKFLQT ATGSGIAAAT LATFPPSIRR ALAIPAHHET GTIKDVKHVV LLMQENRSFD
SYFGTFKGVR GYGDRFAVPA PNGKTIFRQT YTKTTPPSTY TPYRLDESKG NAQRAGSTPH
GWSDSQAAWD HGRMFKWPDV KNLLSMGYYD TAEVPFQRAL AEAFTLCDHY HCGMHTGTIA
NRLFYWSGTN GPNGISPVDG SKVQLAVLNN QFNAGNDIGA STEGWTWTTY ADRLEKAGVK
WKVYQSLIDN FGCNEMMGFR HWRTAIEQMP AARRPVYVPA TDITQPVTAA GPFYDPAIDD
ALSPLAKGFG NTMPQGFLET FREDIRNGTL PAVSWIISPS AYSEHPGPSS PAKGGWYVQE
VLDALTSNPE VWSKTVLLIN FDENDGFFDH LPSPAVPSRN PDGSLAGATT LAEADTAVEY
HNYTPATPKQ PAMDGRPYGP GPRVPMWVVS PWSRGGWVNS QVCDHTSTLM FLEKCFGVAE
PQISKYRRAV CSDLTSAFNF ERPNDEPLPV LPGRKTKAEA DALTAAQEAL PKIVPAADAE
LPVQATGVRP SRALPYELHT SARSDALNGR VQLLFANSGR AAAVFHVYDK LHLSDRLPRR
YVVEPGKQLD GHWNAMADDA GLYDLWVLGP NGFHRQFKGD LNRLRAGSAP APEIRVGYDA
RRGDLYLQMR NDGRRDCRFT VQPNKAYPRP DAYQAGGRDR NGNNGHGSDG HGNGDNGTYG
HNPDGSWSIR VKGGGETGMR WSLDASGQWY DFVVTCDADP SFYRRLAGRI ETGRHSVSDP
AMGLQDRF
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