| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0837 |
|---|
| Symbol | |
|---|
| ID | 7972052 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 921640 |
|---|
| End bp | 923583 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791435 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_002942756 |
|---|
| Protein GI | 239813846 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00928833 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGACA GCAAGAAGAC GAACCCGGCC GGCGCACCCT TTCGCCCGAC GCTCCCGGTC
CGCAGCCTCG CCGACATCCG CAGGCTCGAG GAGACGCCGC TCGAAGAGGC GCTGACGGTC
CGCAGCACCT ACGAGATCTT CCGCAACGCG GGCGCGGCCT TCGGCGGCAA GACCGCGCTG
ACCTTCCTGC GCACCGGCAA CCCGGCCGAC GCGCCGATCC GCTGGTCGTA CGCCGAGCTG
CTCGCGCGCA TCCACCAGAC CGCGAACATG CTGCATGCGC TGAGCGTGGG TCCGCAGGAT
GCGGTGGCGG TGCTGCTGCC GGGCTGCCTC GAGTACCACC TCGCGCTCTG GGGCGGCGAG
GCGGCGGGCA TCGTGCAGCC GCTCAACCCG CTGCTCACCG ACGAGAAGCT GGTGGCGCTG
ATGACCGCGG GCCGCGCCAA GGTGCTGATC GCCTACGGCT CCGACAGCGA ATCGGGCATG
TGGTCGAAGG CGATGCGCCT GCGCGGCCAG GTGCCCACGC TCACCACGGT GCTGCGCGTG
GCACCGCATG ACGAAGCACC GGGCGCGGCC GGCGCCTTGC CCGAAGGCGT GGCCGACTTC
GATGCGCTGC GTTCGGCACA ACCATCTGAT CGCCTCGTGA GCGGCCGCGA CATCGCGCCC
AGCGACATCG CCGCCTACTT CCACACCGGC GGCACCACCG GCGCGCCGAA GCTCGCGCGC
CACAGCCACG GCGCGCAGGT GTTCACGGCC TGGGCCAGCG TGCAGGTCGC GGGCATGAAC
GAACAGGGCA TCTCGATCAA CGGCTATCCG CTGTTCCACG TGGCGGGCGT GCTGCCGGCC
TCGCTGGCCT CGCTCTCGGC GGGCATGGAA GTGATCATCC CGACGACCTC GCTGCTGCGC
AACAAGGAGG TGCTCGCCAA CTACTGGAAG CTGGTCGAGA AGTACCGGCC GACCTCGCTC
TCGGCCGTGC CCACGGTGCT GGCGGCGCTC GCGAACGTGC CGCTGGACGG CGCCGACATC
TCGTCGATCG GCTACTGCCG CACGGGCGCC GCCGTGCTCT CGCCCGAGCT GGCCGCGCGC
TTCGAGCGCC TGTTCGGCCT GCATGTGCAC GAGAGCCTGG GCATGACCGA GATGGCCGGC
ATCTCGACCA TCACGCCGCC GGGCGTGGAC GGTCCGGCGG GCTGCGTCGG CTTTGCGCTG
CCCTACATGC GGATGCGCAT CGTGGCGCTC GACGAGAACG GCAACGCCAG CGACCGCGAT
CTGCCGCCCG GCGAGCAGGG CATGGTGCTG TTCAAGTCGC CCAACCTGTT CTCGGGCTTC
GTCGATCCGG CCGACAACGC CAAGGCCTTC ACCGCCGACG GCTGGCTCGC GACCGGCGAC
CTGGGCTGGA TCGACGGCGA CGGCAGGCTC AACCTCAGCG GCCGCTCGAA GGACCTGATC
ATCCGCAGCG GCCACAACAT CGACCCCAAG GTGATCGAGG ACGCGCTGGG TGCGCATCCC
GCGGTGCAGC TGTGCGCCGC GGTGGGTGCG CCCGATGCCT ATGCGGGCGA GCTGCCGGTG
GTCTTTGCCA CGCTGGTGCC GGGCGCCTCG GCCACCGAGG ACGAACTGCT GGCCTTCACT
GCCGCGCGCG TCGACGAGGC GCCCGCCAAG CCCCGCTCGG TGAGCATCAT CGAGCACATG
CCGATGACCA ACGTCGGCAA GATCTACAAG CCCGAGCTTC GCGCCATGGC CGCGAGCCGC
GTGGTGGCGG CCACGGTGGC GCAGGTGTGC GGGGAGCTTG GCGCGCCGCC GGCCGCCTGG
CCGCGCGTGC GCAGCGAGGG CGAGAGCCTG GTGCAGGTGC GCATCGATGC CGCGGCTGCG
GGCGCGCTCG CAGCGCCGCT GCAGGCGCAG ATCCGCACGG CCCTCGAGGC GCTTCCCTTC
AAGACGCAGG TGCTGGCCGA ATAG
|
|---|
| Protein sequence | MADSKKTNPA GAPFRPTLPV RSLADIRRLE ETPLEEALTV RSTYEIFRNA GAAFGGKTAL
TFLRTGNPAD APIRWSYAEL LARIHQTANM LHALSVGPQD AVAVLLPGCL EYHLALWGGE
AAGIVQPLNP LLTDEKLVAL MTAGRAKVLI AYGSDSESGM WSKAMRLRGQ VPTLTTVLRV
APHDEAPGAA GALPEGVADF DALRSAQPSD RLVSGRDIAP SDIAAYFHTG GTTGAPKLAR
HSHGAQVFTA WASVQVAGMN EQGISINGYP LFHVAGVLPA SLASLSAGME VIIPTTSLLR
NKEVLANYWK LVEKYRPTSL SAVPTVLAAL ANVPLDGADI SSIGYCRTGA AVLSPELAAR
FERLFGLHVH ESLGMTEMAG ISTITPPGVD GPAGCVGFAL PYMRMRIVAL DENGNASDRD
LPPGEQGMVL FKSPNLFSGF VDPADNAKAF TADGWLATGD LGWIDGDGRL NLSGRSKDLI
IRSGHNIDPK VIEDALGAHP AVQLCAAVGA PDAYAGELPV VFATLVPGAS ATEDELLAFT
AARVDEAPAK PRSVSIIEHM PMTNVGKIYK PELRAMAASR VVAATVAQVC GELGAPPAAW
PRVRSEGESL VQVRIDAAAA GALAAPLQAQ IRTALEALPF KTQVLAE
|
|---|
| |