Gene Vapar_0804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0804 
Symbol 
ID7971856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp887614 
End bp888228 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content71% 
IMG OID644791402 
Productisochorismatase hydrolase 
Protein accessionYP_002942723 
Protein GI239813813 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.901897 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCGG AAACGAAGCC TGTGGCGGCG AAGACGGCGC TGCTCATCGT CGACCTGCAG 
AACGACTTTC TCGACCCCAA CGGCGCCTAT GCGCGCGGCG GCGACACCAA CCCGCCCGCG 
CTGCTGCTGC CGGCGCGCGT GGCCGCGGTG GCGCGCGCGC TCAAGGCCGC GGGCGGCCTC 
GTGGTCGCCA GCCAGTTCAC GCTGTGGCCC GATGCGGCCG GCGAGCCGAT GGTGTCGCCG 
CACCTGAAGG CGCTGCGCCC CTACCTGAAG AAGGGCGACT TCGCACCCGG CAGCTGGGGC 
CAGGCCAACG TCGATGCGCT GGCCGGGCTG GTCGACGTGG CGGTCAGCAA GGTTGCCTAT 
TCGGCCTTCT TCAACACCCA GCTCGACTGG GTGCTGCGCC GCGCGGGCAT CGACACCGTG 
GCCGTGTGCG GCATCGTGAC CAACGGCGGC GTGGCCAGCA CCGTGCGCGA TGCCCACATG 
CGCGACTACC GCACGCTGGT GCTGGCCGAC GGCTGCGCGG CCTTCGGCGA GGAGCGCCAC 
CAGACCTCGC TGGCCGACAT GCGCAACGTG GCCGAGGTGA CCGACTGCGT GGCCTTCACC 
GCTTCGCTCG CATGA
 
Protein sequence
MSAETKPVAA KTALLIVDLQ NDFLDPNGAY ARGGDTNPPA LLLPARVAAV ARALKAAGGL 
VVASQFTLWP DAAGEPMVSP HLKALRPYLK KGDFAPGSWG QANVDALAGL VDVAVSKVAY 
SAFFNTQLDW VLRRAGIDTV AVCGIVTNGG VASTVRDAHM RDYRTLVLAD GCAAFGEERH 
QTSLADMRNV AEVTDCVAFT ASLA