| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0798 |
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| Symbol | |
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| ID | 7971850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 879756 |
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| End bp | 881045 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791396 |
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| Product | 3-isopropylmalate dehydratase large subunit |
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| Protein accession | YP_002942717 |
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| Protein GI | 239813807 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
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| TIGRFAM ID | [TIGR01343] homoaconitate hydratase family protein
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.963683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTCA ACGCTCCAGA CCGCGCGCCG GCCCAACAGA CGCTGGCGCA GAAGCTCATC
GCGCGCGCCA GCGGCCGCGC GCAGGTGGCG GTGGGCGAGA TCGTGACTTG CGGCGTCGAC
ATGGCCATGT TCCACGACTC CTCCGGTCCG CGCCGGCTGC AGCCGATGCT CGAGGAGCTC
GGCGCGCAGA TCTGGGACCG CTCCCGCGTG GTGCTCGTGA TGGACCACTA CGTGCCCGAG
CGCGACGACG ATTCGCGCCG CATCGTGCGC ATTGCGCGCG ACTGGGCGCG CGAGCAGCAG
CTGCCGCACG TGTACGACAG CCAGGGCATC TGCCACGTGG TGGTGCCGCA GCACGGCCAC
ATCCGCCCCG GCATGCTGTG CGTGGGCGGC GATTCTCATT CGCCCACGGG CGGCGCATTC
GGTGCCTACA TGTTCGGCAT CGGCAGCACC GAGATGCTGG GCGTGATGGT CACCGGCGAG
ATCTGGCTGC GCGTGCCGGA GACCATCCGC ATGTGGTGGG ACGGCGCGCT GCCCGCCGGC
GTGACCGCCA AGGACATGAT GCTGCACATG ATCGGCCGCT TCGGCATGAA CGGCGGGCGC
TACCAGGCGG TGGAGTTCGC GGGCCCGGCC GTCGCCGCGC TGTCGATGCA GGAGCGCATG
ACGCTCTCCA ACATGAGCGC CGAGCTGGGT GCGCAGGCCG GCCTGATCGC GCCCGACGCC
ACCACCGCCG CGTTCCTCGC ACAAGCCGGT GCGCCGCCGG TCGACATGGC GCCGTGGTTC
ACCGACGAAG GCGCCGCGCT CACGCACCAC CGCTTCGACG CCGCCGCGCT CGAGCCCTAC
GTCGCCGCGC CGCACAGCCC GGCCAACGCG CACGGCGTGA GCCGCTATGT GGGCACGCAT
GTCGACCTGG CCTACATCGG CGCCTGCACC GGCGCCAAGC TCGACGACCT GCGCGCCGCG
GCCCAGGTGC TGCGCGGCCA CAAGGTGGCG GCGGGCATCC GCCTGATCGT GGCGCCGGCC
AGCCTGCACG ACCAGGAGCG GGCGCGCGAA GAGGGCGTGC TGCAGGTGCT GCTGGACGCG
GGCGCCGAAC TCTTTCCGAC CGCCTGCGGC GCCTGCTCGG GCTACGGCGA TCCGATGGGC
GACGGCATCA CGGTGATCTC GACCACGGCA CGCAACTTCA AGGGCCGCAT GGGCTCGCCG
ACCGCACAGG TGTACCTGGG CTCGCCCTAC ACAGTGGCGG CGGCCGCACT GCGCGGCTGC
GTGACCGACC CGCGCGAGGT GCTCGCATGA
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| Protein sequence | MTFNAPDRAP AQQTLAQKLI ARASGRAQVA VGEIVTCGVD MAMFHDSSGP RRLQPMLEEL
GAQIWDRSRV VLVMDHYVPE RDDDSRRIVR IARDWAREQQ LPHVYDSQGI CHVVVPQHGH
IRPGMLCVGG DSHSPTGGAF GAYMFGIGST EMLGVMVTGE IWLRVPETIR MWWDGALPAG
VTAKDMMLHM IGRFGMNGGR YQAVEFAGPA VAALSMQERM TLSNMSAELG AQAGLIAPDA
TTAAFLAQAG APPVDMAPWF TDEGAALTHH RFDAAALEPY VAAPHSPANA HGVSRYVGTH
VDLAYIGACT GAKLDDLRAA AQVLRGHKVA AGIRLIVAPA SLHDQERARE EGVLQVLLDA
GAELFPTACG ACSGYGDPMG DGITVISTTA RNFKGRMGSP TAQVYLGSPY TVAAAALRGC
VTDPREVLA
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