| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0792 |
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| Symbol | |
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| ID | 7971844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 873899 |
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| End bp | 875101 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791390 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002942711 |
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| Protein GI | 239813801 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGAACC GCCGCAGTTT CGTGTCGCAG TCCGCCGCCC TGGCGACCGC CGTCGCCTTC
CCGCTCGTGG CCGGCGCGCA GCCCAAGACC GTCAAGGTCG GCGTGCTGCA TCCGGTCACC
GGGGCGCTGG CCTATTCGGG CCAGCAGTGC CGCCTTGGCG CACTGATGGC CATCGAGGAC
ATCAACGCTG CCGGCGGCAT CAAGGCGCTG GGCGGTGCGA AGCTCGAGGC CCTGCTGGGC
GACGCGCAGT CGCAGCCGCA GGCCGGCGCG GCCGAGGTCG AGAAGATGAA CGAGGCCGGT
GTCTCGGCCA TCGTGGGCGC CTACGCCTCG GCCATCTGCC TCGCGACCAC GCAGGCGGCG
GCCAAGTACA ACCTGCCGCA CGTGGTCGAC GTGGGCGTGG CCGACCAGAT CGTCGAGCGC
GGCCTGAAGA ACACCTTCCG CTTCGGCCCC GGCTACAAGA AATCGACCGA GGTGGCCATG
GCCAACCTGC TGGTGCTCAA CAAGGCCGCG GGCAACCCGG CCAAGACGGT GATGATCATT
CACGAGGAGT CGCTGTTCGG CGCCGGCACC GCGCAGCTGC TCTCGCGCGA ACTGCCGGGC
TACGGCTTCG AGGTGAAGGA GGTGGTGAAG CACGCCAACC CCACGCGCGA CTTCAACAAC
ATCGTGCTGC GCATGAAGTC GGTCAACCCC GACATCGTGA TCCCGGCCAA CTACTACAAC
GAGTACGCGC TGCTGGTGCG CACCATGCAG CAGCAGAAGG TGGTGCCCAA GGCGATCTTC
TCGGTGCTGG GCGGCGCCGC ATCGAGCTAC AAGTTCGTGA AGGAGTTTCC GGACGCGGCC
AACGGCATCA TCGACTGCAA CCACTGGTTC AACCCGAAGG ACAAGCGCTC GCAGGAGCTG
CGCAAGCGCG TGGAGGCCAA GGGCCAGTTC TTCAGCTACG AGGTCTTCAT GACCTACACC
GCGATGTGGC TGCTGGCCGA TGCGCTGGAA CGCGCGAAGT CGGCCGAACG CGCGGCCATC
GTCGACGCGC TGGAGAAGAG CACCTTCTCG AATCACATCA TGCCGTACGG CCCGACGAAG
TTCGTCAACG GACAGAACGA AGGCGCGCAG CCGCTGATGA CGCAGGTGGT GAAGAACGAC
ATCAAGGTGA TCATTCCGCG CGACTACCGC GAGGTGGAGC CTGTGTTTCC GCTCAGGGCA
TGA
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| Protein sequence | MQNRRSFVSQ SAALATAVAF PLVAGAQPKT VKVGVLHPVT GALAYSGQQC RLGALMAIED
INAAGGIKAL GGAKLEALLG DAQSQPQAGA AEVEKMNEAG VSAIVGAYAS AICLATTQAA
AKYNLPHVVD VGVADQIVER GLKNTFRFGP GYKKSTEVAM ANLLVLNKAA GNPAKTVMII
HEESLFGAGT AQLLSRELPG YGFEVKEVVK HANPTRDFNN IVLRMKSVNP DIVIPANYYN
EYALLVRTMQ QQKVVPKAIF SVLGGAASSY KFVKEFPDAA NGIIDCNHWF NPKDKRSQEL
RKRVEAKGQF FSYEVFMTYT AMWLLADALE RAKSAERAAI VDALEKSTFS NHIMPYGPTK
FVNGQNEGAQ PLMTQVVKND IKVIIPRDYR EVEPVFPLRA
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