| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0756 |
|---|
| Symbol | |
|---|
| ID | 7971808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 826548 |
|---|
| End bp | 827435 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644791354 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_002942675 |
|---|
| Protein GI | 239813765 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGATTT TGCTCACGGG CGCGGAAGGG TTCACTGGTC GCCTGTTCGC TGAAAGGGCT
GTAGCGGCCG GCCACACCGT CGTCCCGCTC CAGTCCGATC TGACTCACGA CGAAGCAATA
CGCAAGGAAG TGCTGGAGAT CGCTCCGGAG GCTGTGGTAC ATCTGGCGGC CATCAGCTTC
GTCGGGCACG CGAACGATGC CGCGTTTTAC GCAGTCAACG TGGTTGGTAC CACGAATCTT
CTGAATGCCC TTGTGCAGTT GCCTGAACGA CCTGATCGCG TCCTTCTAGC CAGCAGCGCC
AACATTTACG GCAACACAGC TCGTTCCCCC ATCGACGAGA CCCAAGCGCC GGCGCCGGTC
AATCATTACG GGATGAGCAA GCTGGCGATG GAATACATGG CGCGAACATA CCGAGATCGG
CTGAATCTGG TGATCACTCG CCCATTCAAC TACACCGGCC CCGGCCAAGA CGCCAACTTT
CTGATTCCTA AACTCGCGAT GCACTTTGCA GCGCGTGCAC CATCGATTGC ACTAGGAAAT
CTGGATGTGG AGCGCGAGTT CAACGACGTC CAAATGGTCT GCGATGCCTA TTTGCTGCTG
CTCGCCCACG GGGAGCCGGG CGAGGCCTAC AACATTTGTT CGGGGCGCCC CTATGCACTG
CGCTACGTGA TCGAGACGTT GGCCCGCATG ACCTCACACA GCCCTCGAAT TGAAGTGAAT
CCGGCCTTCG TCAGGGCAAA CGAGGTGCAT CGGCTGTGCG GCAACCCCAG CAAGCTCCGG
GTATTGCTGG CGAAGCAGGG GGCTGTTCTG GCCGAGCCTG CACTCGAAGA AACACTCGCG
CGAATGCTCC TTGCGGCCAA GGGCAGGACT GCGGCGTCAA TCAACTGA
|
|---|
| Protein sequence | MKILLTGAEG FTGRLFAERA VAAGHTVVPL QSDLTHDEAI RKEVLEIAPE AVVHLAAISF
VGHANDAAFY AVNVVGTTNL LNALVQLPER PDRVLLASSA NIYGNTARSP IDETQAPAPV
NHYGMSKLAM EYMARTYRDR LNLVITRPFN YTGPGQDANF LIPKLAMHFA ARAPSIALGN
LDVEREFNDV QMVCDAYLLL LAHGEPGEAY NICSGRPYAL RYVIETLARM TSHSPRIEVN
PAFVRANEVH RLCGNPSKLR VLLAKQGAVL AEPALEETLA RMLLAAKGRT AASIN
|
|---|
| |