Gene Vapar_0744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0744 
Symbol 
ID7971796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp814245 
End bp814877 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content72% 
IMG OID644791342 
ProductThiJ/PfpI domain protein 
Protein accessionYP_002942663 
Protein GI239813753 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACATCG CCATCCTGAC TTTCGACGGC TTCAACGAAC TCGACTCGCT GATCGCGCTC 
GGCGTGCTCA ACCGCATCAA GAGGCCGGGC TGGCGCGTGA CGCTGGCCGC GCCCAGCGCC 
ACGGTCACCT CGATGAACGG CGTCACCGTG CATGCGAGCT CCACGCTCGA GGCGGCCGCC 
GAGGCCGGCG CGGTGCTCGT CGGCAGCGGC ATCCGCACGC GCGAGATCGC GGCCGATCCG 
GCCATCATGG GCGCGCTGCG CCGCCTCGAT GCGGGGCGGC AGCTGATCGG CGCGCAGTGC 
TCGGGCACGC TGCTGCTCGC CAAGCTGGGC CTCTTGGGCG CGGTGCCGGC CTGCACCGAC 
CTCACGACCA AGCCCTGGGT GCAGGAGGCC GGCGTCGAGG TGCTCAACCA GCCCTTCTTC 
GCCAAGGGCA ACGTGGCAAC GGCCGGCGGC TGCCTGTCGG CGCCCTACCT CGCGGCCTGG 
CTCATCGCGC GCAGCGAAGG CATCGAAGCC GCGAAGAGCG CGCTGCACTA CGTGGCACCG 
GTGGGCGAGA AGGAAGACTA CGTGGCGCGC GCGCTGCGCA ACATCGCGCC CTACCTCCCC 
TCGGTTCCGG CAGCCACGGC CGACGCCGCC TGA
 
Protein sequence
MHIAILTFDG FNELDSLIAL GVLNRIKRPG WRVTLAAPSA TVTSMNGVTV HASSTLEAAA 
EAGAVLVGSG IRTREIAADP AIMGALRRLD AGRQLIGAQC SGTLLLAKLG LLGAVPACTD 
LTTKPWVQEA GVEVLNQPFF AKGNVATAGG CLSAPYLAAW LIARSEGIEA AKSALHYVAP 
VGEKEDYVAR ALRNIAPYLP SVPAATADAA