| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0714 |
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| Symbol | |
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| ID | 7974677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 777596 |
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| End bp | 778684 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644791313 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002942634 |
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| Protein GI | 239813724 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.774309 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGTCCG GCGAAGTTTC TTCCGCTTGG CGACGCGTGC TCTGGACGCA TGTTGCCGTT
CTTTTTCTTG CTTTCGCTGC AACGAACAGC AAGGCTCAGC AGCCGGCGCC TGCGCAAGGG
CTTCGGATCG TGGGCGGGCT GGCGAGCGTG AGCCAGTACA CGCTGCATGA AGAGCGCTTC
TGGAGCCAGG ACCTGCGCCG CCTGAGCGGC GGAAAGTACA GCGCGAGCAT CGTGCCGTTC
AACCAGGCCG GCGTTCCGGG GCAGGAAATG CTCAACCTCA TGCGGCTGGG CGTCATTCCG
TTCGGCACCG CGCTGCTCAG CCAGGTCAGC AACGAGTACC CCGAACTGGG CACGCCCGAC
ATCGCCGGGC TGAACCCCGA CATGCCCACG ATGCGGCGGG TGGTCGCAGC CTTTCGGCCT
TACCTGGAGA AGACGCTGCG CGAACGCCAT GGCGTCGAGC TTCTCGCGGT GTACGTCTAC
CCCGCCCAGG TGATCTTCTG CAAGCGGGCC GTGACGCGGC TTTCGGACCT GGCGGGGCGG
CGCGTCCGCG TGTCGGGCAG CAGCCAGGCC GACTTCATCC GCGCGCTCAA CGGCGTGCCC
GTCTTCACTG AATTTTCAGA GATCATGGCG AACATGAATT CGGAGAACAC CGAATGCGCC
ATCACCGGTG CGATGTCCGG CAACACGCTG GGCCTGCACA AGATGACGAA TTCGCTCTAC
ACCATGCCCA TCAACTGGGG CCTGGCCGTC TTCGGCGCCA ACACGGATGC CTGGAACGCG
CTGCCTGCGG ACCTGAAGGC CCTGTTGAAA GCCGAACTGC CGAAACTCGA GGCCGCGGTC
TGGAACGAGT CGGAGCGCGA CACCGGCAAC GGCATTGCAT GCAACACGGG CGCCGCGACC
TGCATGAAGG GCACCAAGGG CACGATGGTC GAGGCGCGCC CATCCGCGGA TGACGAACGG
CGCCGGCGCG AGATCTTCGC CACCAGCGTG CTGAGCCGGT GGGTGCAGCG CTGCGGGGCC
GTGTGCGCGG AGGTGTGGGA CCAGACCGTC GGTCCCATTG CTGGAATCAA GGCTCCTGTC
GGGCAGTGA
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| Protein sequence | MRSGEVSSAW RRVLWTHVAV LFLAFAATNS KAQQPAPAQG LRIVGGLASV SQYTLHEERF
WSQDLRRLSG GKYSASIVPF NQAGVPGQEM LNLMRLGVIP FGTALLSQVS NEYPELGTPD
IAGLNPDMPT MRRVVAAFRP YLEKTLRERH GVELLAVYVY PAQVIFCKRA VTRLSDLAGR
RVRVSGSSQA DFIRALNGVP VFTEFSEIMA NMNSENTECA ITGAMSGNTL GLHKMTNSLY
TMPINWGLAV FGANTDAWNA LPADLKALLK AELPKLEAAV WNESERDTGN GIACNTGAAT
CMKGTKGTMV EARPSADDER RRREIFATSV LSRWVQRCGA VCAEVWDQTV GPIAGIKAPV
GQ
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