Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0686 |
Symbol | |
ID | 7974649 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 745880 |
End bp | 747298 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644791285 |
Product | integrase family protein |
Protein accession | YP_002942606 |
Protein GI | 239813696 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGACCA AGCTGACCCT GACCGCTGCA CGGGTAGAGA ACCTGCCCTG CGAGCCCGGC AAACAACAGA CCATCCATTG GGACGCCAAG ACCCCCGGCT TCGGCTTGCG GGTCACGGTG GCCGGCGCGC GCGCCTATAT CTTCGAGTCC CGCCTGTTCG GCAAGACGCT GCGCGTCACA ATCGGGGACG CACGCGCCTG GGAGTTGGGC CGGGCGCGCA CGGAAGCCAG CCGCCTCAAG ATGCTCGTGA ATGAGGGCAA GGACCCCAGG GAGGTGAAGG CCGAGCAGCG CCAGGCCTTG GAGGCCCGCC GAGAAGAGGC CGCACGCCAG GATGTGCTCT TTGGTCAGGC GTGGGACGCC TACATCGAGG AGCGCAAGCC GTTTTGGAGC GAACGTCACT ACCGCGACCA CGTGCAGCAC GCCTCGGAAG GCGGGGTGGC CAGGAAGCGG GGACAGGGCC TCACTCAGGC TGGTCCGCTG GCTGCGCTGC GCCCGCTGCG GCTCCCGGAC CTCACGGGAA CTCGCATCGC GCAATGGCTC ACGGCCGAGA CCGCCACCCG CCCGACGATG ACCGCCCTGT CGTTTCGGCT GCTGCGAGGC TTCATTCGCT GGGCCAAGGA CACGCCGGCC TACAAGGGAC TCATTCCCGC CGACAGTTAC CAAACGCGTT GCGTGAAGGA CGCCGTCCCG CGCGTAAAAG CCAAAGAGGG CGACTGCCTG CAGCGCGAAC AGTTGGCCTC CTGGTTCGCC AGCGTGCGCG AGATCCCCAA CCCGGTCATC AGCGCGTATC TCCAAGGCCT GCTCCTCACG GGCGCGCGGC GCGAAGAGTT GGCGGCGCTG CGCTGGGAAG ACGTGGATTT CCGCTGGCGC GGCCTGACAC TCAATGACAA GGTGGAAGGG ACGGGCGGAC GGACCATCCC TCTCACTCCC TACCTGGCGA GCCTGTTGCT CGAACTCAAG CGGCTGAATG AAGTACCGCC GACTCGGCGG CAAATCAGAC GCCTCGAAGC ACAAGGCCGC ACCTGGAGCC CTTCACCCTG GGTCTTTCCA AGCCCGACCT CAGCAGATGG TAGGCTCGCC GAGCCGCGCA GCGCCCACAC CAAGGCGCTT GAGCAGGCCG ACTTGCCGCA CGTCACGTTG CACGGCCTGC GCCGATCGTT CGGCACATTG TCCGAATGGT GCGAGGCGCC GGCCGGTGTC ATTGCGCAGA TCCAGGGGCA CAAGCCCAGC GCGATCGCCG AAAAGCACTA CCGCCGCCGA CCACTCGACC TGTTGCGCAA GTGGCATGAC CAGATTGAGG CTTGGATTTT GACCGAGGCT GGCGTCGAAT TCACCACCAG GCACGCACCC CAAACACCGA AAAACCATGA AATCAACGAG CTTCACGATA CAAGAGCTAA AGAAGCTGGA CAGCCTTAA
|
Protein sequence | MTTKLTLTAA RVENLPCEPG KQQTIHWDAK TPGFGLRVTV AGARAYIFES RLFGKTLRVT IGDARAWELG RARTEASRLK MLVNEGKDPR EVKAEQRQAL EARREEAARQ DVLFGQAWDA YIEERKPFWS ERHYRDHVQH ASEGGVARKR GQGLTQAGPL AALRPLRLPD LTGTRIAQWL TAETATRPTM TALSFRLLRG FIRWAKDTPA YKGLIPADSY QTRCVKDAVP RVKAKEGDCL QREQLASWFA SVREIPNPVI SAYLQGLLLT GARREELAAL RWEDVDFRWR GLTLNDKVEG TGGRTIPLTP YLASLLLELK RLNEVPPTRR QIRRLEAQGR TWSPSPWVFP SPTSADGRLA EPRSAHTKAL EQADLPHVTL HGLRRSFGTL SEWCEAPAGV IAQIQGHKPS AIAEKHYRRR PLDLLRKWHD QIEAWILTEA GVEFTTRHAP QTPKNHEINE LHDTRAKEAG QP
|
| |