Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0591 |
Symbol | |
ID | 7973575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 650171 |
End bp | 651499 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644791198 |
Product | sun protein |
Protein accession | YP_002942520 |
Protein GI | 239813610 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACCTC CGCTGTGGCG CCAGCTGCAG CTGACCGCAG CGGCGCTCGC GTCGATTCGC GCCGGCAGCT CGGGCACCGT CGCGTTCGAA GCCGTCGAGC CCGCCATGCG CCCCGGCGTG CAGGCGCTCG GCTTCCAGGT GCTGCGCTGG CTCGGCCGCG CCGAGGCCCT GCGCCGCCAC CTGGCCAAGC GCACGCCGCC GCCGTTGCCC GACGCGCTCC TGTGCACCGC ATTGGCACTG GCCTGGGATG CGCAGCACGC GCCCTACGAG CCCTTCACGC TGGTCGACCA GGCCGTCGAG GCGGCAAAGC GCAACCCCGC CACGCGCGCG CAAGCGAGCT TCATCAACGC CTGCCTGCGC CGCTTCCTGC GCGAGCGCGA CGAGCTCGTG GCCGCCACCG ACCATGAGCC GGTCGCACAG TGGAACCATC CGCGCTGGTG GATCGAGCGG CTGAAGCGCG ACCACCCGCG CGATTGGCAG CGGGTGCTTG CCGCCGACAA CGCGCAGCCG CCGATGACGC TGCGCGTCAA CCTGCGCAAG ACCACCGTGG CTTCCTATCA GCTGGCGCTC CAGGCGGTGG GCCTTACGGC CGTCCGGGTG GGGGAGGCGG GCCTGCAGCT GGCGCGCGCC CGCCCGGTGC AGCAGCTGCC CGGTTTTGCC GACGGCGAAT GCTCGGTGCA GGACGCCGCC GCGCAGCTGG CGGCGCCGCT GCTGCTCGAA GGCCTGCTGC CCGCGGCCGG CGCGGCCCCC CTGCGCGTGC TCGACGCCTG CGCCGCTCCC GGCGGCAAGA CCGCGCACCT GCTGGAATTT GCCGGGCCGG CGGCCATCGA GGTGACGGCG CTCGAGGTCG ATGCCGCCCG CAGCCGCCGC ATCGACGAAA CCCTGGGCCG GCTCGGCCTG TCCGCCAGGG TGGTGGTGGC CGACGCCGCG CGGCCGGCCG CCTGGTGGGA CGGCACGCCC TTCGACGCCA TCCTGCTCGA TGCGCCGTGC ACCGCCTCGG GCATCGTCCG GCGCCATCCC GATGTGCGCT GGCTGCGCCG CGAGAGCGAC ACCGCCCAGC TGGCGGTCCA GCAGGCGGCG CTGCTCGCGG CCCTCTGGCC CCTGGTCCGG CCCGGCGGCC GGCTGCTCTA CTGCACCTGT TCCGTCTTCC GGGAAGAAGG CTCGCAACAA ATCGATGCGT TCCTTGCGCA CAACACCGAC GCCCGATTGG GGGCATCGCC GGGCCATTTG CTTCCCCAAA GCGGGGCGAA TGCCCGCGCC GTCCCGGACA ATCCCTCAGG TGACCACGAC GGCTTCTTCT ACGCCCTGCT TGAAAAACGT CCGCGCTGA
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Protein sequence | MQPPLWRQLQ LTAAALASIR AGSSGTVAFE AVEPAMRPGV QALGFQVLRW LGRAEALRRH LAKRTPPPLP DALLCTALAL AWDAQHAPYE PFTLVDQAVE AAKRNPATRA QASFINACLR RFLRERDELV AATDHEPVAQ WNHPRWWIER LKRDHPRDWQ RVLAADNAQP PMTLRVNLRK TTVASYQLAL QAVGLTAVRV GEAGLQLARA RPVQQLPGFA DGECSVQDAA AQLAAPLLLE GLLPAAGAAP LRVLDACAAP GGKTAHLLEF AGPAAIEVTA LEVDAARSRR IDETLGRLGL SARVVVADAA RPAAWWDGTP FDAILLDAPC TASGIVRRHP DVRWLRRESD TAQLAVQQAA LLAALWPLVR PGGRLLYCTC SVFREEGSQQ IDAFLAHNTD ARLGASPGHL LPQSGANARA VPDNPSGDHD GFFYALLEKR PR
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