Gene Vapar_0562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0562 
Symbol 
ID7972972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp621124 
End bp621606 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content65% 
IMG OID644791165 
Producthypothetical protein 
Protein accessionYP_002942491 
Protein GI239813581 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAAAG TCACCCGCCC CCGCAACGAG AAAGGCGAGT TCCTCGTCGA CTACGAAGAG 
AAGGTGTTCG AAGACGTCAA GGCCGAGCCC GGCGAGAAGG CGCTCGTCAC CTTCCACACG
GTGGCCTTCG AGGGCTCGAT CGGCTTCGTG AACCTGCTGC AGGCCACGCG CCTCAGGCGC
AAGGGCTACG AGACCTCGGT GCTGCTGTAC GGCCCCGGCG TGACGCTGGG CGTGCAGCGC
GGCTTTCCGA CGCTGGGCGA CGAGGCCTTT CCGGGTCACC AGAACTTCAA CAAGCAGATC
GGCAAGTTCA TGGAGGAAGG CGGCAAGGTG TATGCGTGCC GCTTCGCGCT GCAGGCGCTG
TACGGCCACG GCGAGGGCGC GCTGATCGAG GGCATCACGC CGATCAACCC GCTCGACGTG
CTGGACCTCG TGCTGCTGCA CAAGAAGGCC GGCGCCGTGA TCCTCGACAC CTGGACCCTG
TAA
 
Protein sequence
MPKVTRPRNE KGEFLVDYEE KVFEDVKAEP GEKALVTFHT VAFEGSIGFV NLLQATRLRR 
KGYETSVLLY GPGVTLGVQR GFPTLGDEAF PGHQNFNKQI GKFMEEGGKV YACRFALQAL
YGHGEGALIE GITPINPLDV LDLVLLHKKA GAVILDTWTL