| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0554 |
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| Symbol | |
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| ID | 7972964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 613524 |
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| End bp | 614849 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791157 |
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| Product | hypothetical protein |
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| Protein accession | YP_002942483 |
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| Protein GI | 239813573 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3455] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.404034 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCCGGC TGCTCGACTG TTTTTCCGCA TTCGTCTCCT TCGGCCTCGC CCTCGACGCA
TCGATCGCGG CCGGCCGCGC CGCGCCGCCC TCGCACGCTG CCGCGCAGCA ACAGGCCCGC
CGGCTGCTCG ACGCGGCGCG CGCCTGCGCA TCGGGCCAGC CCGCCGCGCA GGTCGAATCG
GCGGTCTTTG CGATGGTGGC CTGGATCGAC GAGATCCTGG CGCGCCATCC CGGTGCGGCC
GCGGGCGCGG CGCCGCTGCA GGTGCAGCTG TTCAACTCGA ACAACGCCCA CAGCGAGTTC
TTCCACCACC TGTCGGCGCT GGGCGCCGAG GACGACGAGC TGCGCGAGGT CTACTGGCAT
GCGCTGGTGC ACGGCTTCAA GGGCCAGTAC TACTTCGAGA GCGACGACCG CGGCGAGCTC
GGCAAGCTGA AGGAGCTGCA CGGCCACCAG CTGCGGCAGA GGCCCCTGGC GCTCGGCAGC
CTGGTGCAGG ACCGCATCAC GCCGCAGCCC TATGGCGTGG CGGATCCGCC GGGCCCGCAC
GACCTGCACC GCCGCGACCG CAGCCTGCTG CGCGCGCTCG GGGCGCTCGC GCTGCTGCTG
CCGCTGCTCT ATCTGCTGTG GTGGCAGTGG CCGGCCGGGC TGCACGCGGG CGAGCCGGGA
CCGGCGCAGC GCATCGAGCA GCATCTTCAA GGCTATGCAT GCGCCGATCT CTCGGCTTCG
GCCGACAGGG GCGGTAAGCT GCACGTGAGC GGCTTCGTCT CGCTGCCGGC CGACCTCGAG
CGGGTGGAGC GCGAGGTGGC CGGCCTGCTG CCCGATGGCG GCTCGCCCAC CTTCGACGTC
AGGCTGCGCG TGTGGCCCCA CTGCGAGGTG TTCGCCATCC TGAAGCCCTA CCAGCTGCGC
AACCGCGAGA AGGCCCTCGG ACTGGACGTG ACGGCCGTGA CGGCCCGCAA CGGCCGGCTG
CGCGAAGGAG ACGACGTACG CATGCAGGTG GCCGCGCCCC GGCACGACAG CTACCTGTGG
GTCGACTACT ACACCGCCGA CGGTTCGGTC ATGCACCTGA ACACAGGCCA GCCGATGCGG
CTGCGCGCCG GCGAGAAGCT GGAGCTGGGC CGCGACATCC CGGCGAGCTG GCTGGTGGGC
CCGCCCTTCG GCACCGTGCT GGTCACGGCG CTCTCGTCCC CCACGCCGCT CGACGGCGCG
GCCGACCGGC CGCCCTACGA ACTCGCTTCG GCCTACCTGC TGCGGCTGCG CGAGGTGCTC
GCGGCCAACA AGGGCAACGA GCGGCTGCTT GCCGATTTCG AGTTCCTCGA GACCACTGCA
CGTTGA
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| Protein sequence | MLRLLDCFSA FVSFGLALDA SIAAGRAAPP SHAAAQQQAR RLLDAARACA SGQPAAQVES
AVFAMVAWID EILARHPGAA AGAAPLQVQL FNSNNAHSEF FHHLSALGAE DDELREVYWH
ALVHGFKGQY YFESDDRGEL GKLKELHGHQ LRQRPLALGS LVQDRITPQP YGVADPPGPH
DLHRRDRSLL RALGALALLL PLLYLLWWQW PAGLHAGEPG PAQRIEQHLQ GYACADLSAS
ADRGGKLHVS GFVSLPADLE RVEREVAGLL PDGGSPTFDV RLRVWPHCEV FAILKPYQLR
NREKALGLDV TAVTARNGRL REGDDVRMQV AAPRHDSYLW VDYYTADGSV MHLNTGQPMR
LRAGEKLELG RDIPASWLVG PPFGTVLVTA LSSPTPLDGA ADRPPYELAS AYLLRLREVL
AANKGNERLL ADFEFLETTA R
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