| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0531 |
|---|
| Symbol | |
|---|
| ID | 7972941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 587530 |
|---|
| End bp | 590541 |
|---|
| Gene Length | 3012 bp |
|---|
| Protein Length | 1003 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644791134 |
|---|
| Product | type VI secretion system Vgr family protein |
|---|
| Protein accession | YP_002942460 |
|---|
| Protein GI | 239813550 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATC ACGAGTTCCG CATCGAGACA GATTCACCCG CCAAGGACGA CCTGATGTTC
TGGCGCATCG TGGGCCACGA GGCGCTGGCG CGCCCGTCGG CCTACGAGCT CACGGTGCTG
TCGAAGAACA AGGCGCTCGA TGCCAAGGAC ATTCTCGGCC GCGCTTTCGA CGTGGTCATC
CAGTTCCAGG ACAAGGACGG CGGCGTGCAC GAGCGCCACT GCCAGGGCCA CGCCGTGCGC
TTCGTGCGGG CCGGGCATGT GGGCAGGCAT TTCGAATACC GCGTCACGCT GCGCTCGTGG
TTCTGGCTGC TCACCAAGCG CACCAACTCG CGCATCCTGC AGGACAAGAA GGTGCTCGAG
GTGCTCGACG CGGTCTTCGA AGACAGCCCG ATCAAGCGCT TCAAGAAGAC CAAGGCCGGC
AACGTCATCG GCACCCACAC GCCCCGGCGC TACTGCGTGC AGCACCAGGA GAACGACTAC
CAGTTCCTCT CGCGCCTGCT GGAGGACGAA GGCATCTACT ACTGGTTCGA CGCGCACGAC
GCGCCCGGCA CCATGCACCT GTCGGACGCG AGCGACCTGG CGCACGAGAA GCTGCCGGTG
GAAGGCACGC TGCGCTACAT GTCCAGCGAC GCGAGCGAGG CGCGCCACAA CGAGATCTCG
CGCTGGGTGA GCGCACGCCA GTTCGACACC GGCAAGCAGG CCTCGCGCGA CAGCGACTTC
AAGGCGATCA AGAAGAAGCT GGCTGCCACC ATCGATGTGA AGGACGACCA CGAACTCGCC
GACTTCGAGG AGTTCGAATT CCCGGGCGGC TACTTCACGG GCGACGACGG CGAGAACCGC
ACCAAGCTGC GCGGCGACGA GCTCAACGCG CGCCGCGACC GCCACTGGGC GCTGACCACC
TGGCCCGACG TGGCCGCGGG GCGCAGCTTC AAGTTCGAGG GCGACCCCGA CGGCACACGC
AACGGCGACT ACGTGATCGC GGCCTGCACC TTCATGGCAA GCCACCCTGG CTATGAAAGC
GTGGGCGCCG GCACGGCCGT TCCACAGGAC CTGCGCACGG CGCTGGCCGG CGTGCTGCGC
GACGATGCGG TGAACGCCGA CACGCTGCAG GTGCTGGAAG ACCTGATCGC CAGCACGCCG
ATGCTCAGCA CCTCGCAGCC GGGCACCAGC GCATTCCTGA TCACCGCGAT ACCGATGGAG
CGGGCCTACC GGCCGCCGCG CCTCACGCCG CGCGTGACCA TGCCCGGTCC GCAGACGGCC
ATCGTGGTCG GCCCCGCGGG CGACGAGCTG CACGTGGACG AGCACGGCCG CGTGAAGGTG
CACTTCCACT GGGACCGCTA CGACGAGAGC AACGAGAAGT CGACCTGCTG GGTGCGCGTG
TCGCAGCCCT GGAGCGGCAA GGGCTGGGGC GGGTACTTCA TTCCGCGCAT CGGCCAGGAG
GTGATCGTCG ATTTCATCAA CGGCGACCCC GACCGGCCGA TCGTCGTGGG CCGCGTCTAC
AACGACGACC AGCCCATTCC CTACAAGTCG CCCACGCAGA GCGGCTTCAA GACCCGCTCC
ACGCCCGGCG GCGGTCCCGC GAACTACAAC GAGATCATGT TCGAGGACAA GAAGGGCGAG
GAGAACATCA ACATCCATGC GGAGCGCAAC ATGAGCCGCA GCGTGGAGCG CGACGATTCC
ACCACCGTGG GCCGCGACCA GAGCCTGGTG GTCGAGCGCG ACCAGAGCGG CATCGTCCAG
CGTGACCAGA GCCTGGCCGT CACGCGCAAC CGCAGCATCC ACGTCAAGAA CAACGAGTCG
CACATCGTCG ACGTCAACCA GAGCCTGAAG GTCATCGGCA ACCAGGAAAA CAAGATCGTC
GGCAACCAGG TCACCACGGT GGACGGCGTG CACCAGGTCG AGGCCAAGGG CGACATCCGC
ACCAAGACCT CGGGCAACCG CATCGACCAC ACCACAGGCA ATGAAACGCG CAAGGTAAGC
GGCAACCAGA CCTTCACCGT CTCCGGAAAC ATGGGCTTCA AGGCGGCCAC CATCGTGATG
GAAACGCCGC ACTTCGAATG GAAGATCACC GGTGCCAATT CCGCGGTGAT GGCGGTGCCC
AGCGGCCCCT ACTCGATCAT GGCGAACAAG TTCAGCGTGC TGAGCAACAC GGACGCCTCG
ATCCTGGCGG TCGGCAAGAT CAACCAGACG TCGATCGAGA ACAACGTCAC GGTCATGGGG
AACAACAACA GCGGCTACGT CGGCATGGCG AGCGAGACGA ACATGGGGCT GGCCCGCAGC
ACCTTTCTCG GCGTGGCCAT CGACACCTTC ATGGGTGCGA GCATCAGCAA CACGCTGGCG
CTGCAGTTCG AGGCGGTGGC CGCCGCCAAG CTGAGCATCG CGGTGGGGCC GCACATCGAG
ATGAATTCGA TGAAGATGTA CGTGCCCGGT GGAGGGGCCG CCGGCGGCGG CGCCACGGTG
CTGAGCGAGG GCGCGGAGTT CCTGGCGATC GTCGGCGTGC TGGAAGGGGT GAACGTGGGC
TTCATGTCCT CCGTCATCGG GTTCGCCGAG CTGTCGGACC AGTACAGCGA TGCCAAGGCG
GAACTGGCGC AGGCGGCCCG GGATGCCGCC GCTGCCGGGC ACCCGGGCCT GGCCGCGCGC
CTGAACCGCC TGGCCACCGA CGGCGCGGGC ACCATGGACA AGGACGCGCC GACGAGCACC
CAGAACACCC GGGGCGACGC CTTCTCATCG GACTACGACC CCTTTGCCGT GCCCGACGGC
GGATCTTCCA GCGATCCATC CGCCGGCGGC GACGGGCCGA CCTCGTCGGA GCCCAGCTCG
TCAGAGCCCA GTTCATCCGG GCCCAGCTCG TCCGAGCCCA CTTCGTCGGA GCCCAGCTCG
TCAGAGCCCA GTTCGTCCGA GCCCAGTTCG TCCGAGCCCA GTTCGTCCGA GCCCAGTTCA
TCCGGGCCCA GCTCATCCGG GCCCAGCTCA TCAGAGCCCA ATTCGTCCGA ACCCAATTCC
TCCGGTTTCT GA
|
|---|
| Protein sequence | MADHEFRIET DSPAKDDLMF WRIVGHEALA RPSAYELTVL SKNKALDAKD ILGRAFDVVI
QFQDKDGGVH ERHCQGHAVR FVRAGHVGRH FEYRVTLRSW FWLLTKRTNS RILQDKKVLE
VLDAVFEDSP IKRFKKTKAG NVIGTHTPRR YCVQHQENDY QFLSRLLEDE GIYYWFDAHD
APGTMHLSDA SDLAHEKLPV EGTLRYMSSD ASEARHNEIS RWVSARQFDT GKQASRDSDF
KAIKKKLAAT IDVKDDHELA DFEEFEFPGG YFTGDDGENR TKLRGDELNA RRDRHWALTT
WPDVAAGRSF KFEGDPDGTR NGDYVIAACT FMASHPGYES VGAGTAVPQD LRTALAGVLR
DDAVNADTLQ VLEDLIASTP MLSTSQPGTS AFLITAIPME RAYRPPRLTP RVTMPGPQTA
IVVGPAGDEL HVDEHGRVKV HFHWDRYDES NEKSTCWVRV SQPWSGKGWG GYFIPRIGQE
VIVDFINGDP DRPIVVGRVY NDDQPIPYKS PTQSGFKTRS TPGGGPANYN EIMFEDKKGE
ENINIHAERN MSRSVERDDS TTVGRDQSLV VERDQSGIVQ RDQSLAVTRN RSIHVKNNES
HIVDVNQSLK VIGNQENKIV GNQVTTVDGV HQVEAKGDIR TKTSGNRIDH TTGNETRKVS
GNQTFTVSGN MGFKAATIVM ETPHFEWKIT GANSAVMAVP SGPYSIMANK FSVLSNTDAS
ILAVGKINQT SIENNVTVMG NNNSGYVGMA SETNMGLARS TFLGVAIDTF MGASISNTLA
LQFEAVAAAK LSIAVGPHIE MNSMKMYVPG GGAAGGGATV LSEGAEFLAI VGVLEGVNVG
FMSSVIGFAE LSDQYSDAKA ELAQAARDAA AAGHPGLAAR LNRLATDGAG TMDKDAPTST
QNTRGDAFSS DYDPFAVPDG GSSSDPSAGG DGPTSSEPSS SEPSSSGPSS SEPTSSEPSS
SEPSSSEPSS SEPSSSEPSS SGPSSSGPSS SEPNSSEPNS SGF
|
|---|
| |