Gene Vapar_0523 details

Gene Information

• Locus tag: Vapar_0523
• ID: 7972933
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 576526
• End bp: 578472
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644791126
• Product: peptidase C14 caspase catalytic subunit p20
• Protein accession: YP_002942452
• Protein GI: 239813542

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.54247
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTGGC TGCTTGCCTG CAGCAGCTTT TCCTTCGCAA CCCAGCGTGC CCTGCTCGTC 
GGCGTCTCCG AACTCGTCAA CCAGCCGCAG GCCCTGTGGC TGCAGGCGCC GCGCAACGAC 
GTGATGCTGA TGCGCGATGC CTTGCTGAAG CAGGGCTTTG CCCCATCCGA CATCACCGTG 
CTCGCCGACG GCGTGGGCGG CGCGGTGCTG CCCGAATCGC AGGCCATCCA CGATGCACTC 
GGCCGGCTGC TCGCGCAATC GAGAAGCGGC GACTTCGTGC TGCTCTACTT CTCGGGCCAC 
GGCACCCGCC TGCGCGACAG CAGCAAGCTC TACCAGGAGC CCGACGGCCT TTCGGAAAAC 
TTTCTCGCGC GCGATGTGCG CGGCACGCTC GGCAGCGACA GCGCGCTCAC GGGCGACCTG 
CGCGATGCCG ATTTCGATGC CTGGATCCAG GCCCTCCTCG CGCGCAACGT GTTCGTCGCC 
TCCATCTTCG ACACCTGCTC GGCAAACTCG ATGACCCGCA GCGGCACGGC CGAGAGCCCG 
CTCATCGCCG ATGGGCCGGC CGACGACGAG GTGCGCTGGC GCGGCCTGCG CATCGGACAG 
CTGCTCGGGG CGCCCGCTCC GGCGGCGCGC GCTCCCGTGG CGCGGCCCGT CGCAGCCGAG 
CCGGTGCCGC GCGCGCGCTA TGTCGCGCTC TTCGCTTCCG AGAGCCACCA GATCACGCCC 
GAGCTGCGGC TGCCGCGCAA GAGCCGCAAT GCGCGCCCGC AGGGCCTCCT GACCTGGGCC 
GTGGTGGAGG CGCTCTCGCG CAGGCCCGCC ACCTGGCGCG AGCTGTTCGA TGGCGTGCTC 
GCGGCCTATC CGCCGGTGAT CGACGAACTC GCGCAGCGCT TTCCCACGCG CGAGCTGCCA 
TCGCCGGTGG CCGAGGGCAA CCTCGATGCG CCGATCTTCG CCAACCGCGC GCAGCCGGTT 
TCGACGCGGC CGGTCTGGCG CGCACAGCGC TCCGGCGACG CGCTGGTCCT GCAGGCCGGC 
CAGCTCGACG GGCTGGTGGC GCAGCAGCCG CTGCGCGTGC TGGCCACAAT GGAAGACGGC 
ACGGTGCGCA GCGCCGAGGG CCTGCTGCTG CAGGCCTACA CCGACAAGGC GCGCATGGCG 
GTGCCGCCCG CGCTGCGCGA GCTGTCCGGC GCCGCGCTCT GGAACATCAC GCCGCTCGGC 
GAACCGGCGT CGGTCGCGCT GCGCGTGCGT GCGGAGCAGG GCCTGCCGCC CGGGCTGAGC 
CTCGACTACC CCGCCTCGGT CGTCGCCGTG GCCGCGGCGG ACGGTGCCGA CGTGCACTGG 
AGCGCCTCCC GGCTCGACGT GCTCTCGCCC GCGCTCGGCG CCGGCGCCAG GCCTGTGCCG 
GCCGATGCCG CAGCGGCCCG CCGGCATCTT GAAATGCTGG CCCGGCTCAA GTGGCTCAAC 
CAGCTCTACG CCATCGCCAG GGATGCGCAG TTCGAGGGCT TCGACGCACT GTTCGAAGTG 
TGGAACGGCG ACCGCCTGGT GCGCAGCGGC CCGGTCCGCC AGGCCGGCGC CGGGCTGCTG 
CCGCTGCGCG CCGGCGAGCG CGCCGTGCTC AATGTGCGCA ACGCCACCGG GCGCTCGGTG 
GACCTTGTCG TCGTCGGCAT CGACCCGCAG GGCGGCGCCC GCCAGGTCTA CCCCGGGGAC 
CCGGGCGAGA CCAACCGCTT CAAGCGCGGC ACGCGCGACG CGCCCGCCGT CAAGCGCTTC 
GAATTGCCCT GGTTCAACGC CGAAGGCGGC CGGCTGCTGG TGCTGGCTGC GCCGGCAACG 
CCCTACAGCG CGCCGCGCCT GTTCGGCGCC GGCACGGCCG ACGGGGTGGC CCAGGTGCGG 
GTGCGCGGCG CCCTGCAGCA AGACAGCGAG CGGCAGAGCT TTGCCGCGAT GGTGCATTGG 
GCGGGCGAAG CCTTGTCCGC CAGGTAA 

 

Protein sequence

MAWLLACSSF SFATQRALLV GVSELVNQPQ ALWLQAPRND VMLMRDALLK QGFAPSDITV 
LADGVGGAVL PESQAIHDAL GRLLAQSRSG DFVLLYFSGH GTRLRDSSKL YQEPDGLSEN 
FLARDVRGTL GSDSALTGDL RDADFDAWIQ ALLARNVFVA SIFDTCSANS MTRSGTAESP 
LIADGPADDE VRWRGLRIGQ LLGAPAPAAR APVARPVAAE PVPRARYVAL FASESHQITP 
ELRLPRKSRN ARPQGLLTWA VVEALSRRPA TWRELFDGVL AAYPPVIDEL AQRFPTRELP 
SPVAEGNLDA PIFANRAQPV STRPVWRAQR SGDALVLQAG QLDGLVAQQP LRVLATMEDG 
TVRSAEGLLL QAYTDKARMA VPPALRELSG AALWNITPLG EPASVALRVR AEQGLPPGLS 
LDYPASVVAV AAADGADVHW SASRLDVLSP ALGAGARPVP ADAAAARRHL EMLARLKWLN 
QLYAIARDAQ FEGFDALFEV WNGDRLVRSG PVRQAGAGLL PLRAGERAVL NVRNATGRSV 
DLVVVGIDPQ GGARQVYPGD PGETNRFKRG TRDAPAVKRF ELPWFNAEGG RLLVLAAPAT 
PYSAPRLFGA GTADGVAQVR VRGALQQDSE RQSFAAMVHW AGEALSAR