| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0520 |
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| Symbol | |
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| ID | 7972930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 572719 |
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| End bp | 574323 |
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| Gene Length | 1605 bp |
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| Protein Length | 534 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791123 |
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| Product | 3D domain protein |
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| Protein accession | YP_002942449 |
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| Protein GI | 239813539 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2821] Membrane-bound lytic murein transglycosylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACGA CACTGTCGCC GGTTCTTTTC ATTTCCGCTC TGCGCTGGGC GGCCACCGCA
GCAGCCATGC TTGCGGCGGG TTGCGCCAAC ACGCCGCCGA CGGCGAGCGC CGGCGCTTCG
GACACGGCGG CCAGCGCGGC GGCCGCCGGC TCGACGACGG CGACGCTCCC ACCGCCGCGC
CCCGCCGGCT CGAGCACGGC CGGCCAGGCG CGCACCTTCT CGACCCAGCT GGCCACCTAC
ACCTCGGTCA GCTTCGATGC CGTGCCCGGA TGGGCGCGCG ACGACTTCTC CGAAAGCTGG
CCCGCCTTCC TCGGCAGCTG CAAGGTGCTC ACCGGCCGCG GCGCCGAGTG GAAGGACGTG
TGCGCGCGCG CCCTCCGGGT CGACAGCAAG AACAACAGCG CGATCCGCGC CTTCTTCGAG
CAGGAGTTCT CGGCCTACCA GATCCGCGAC GACGACCGCA AGCCCGATGG CGTGGTCACC
GGCTACTTCG AGCCCGAGAT CCCGGGCAGC CGGCAGTACG CGGCGCCGTT CATCTACCCG
GTCTATGGCC AGCCCGAGGA CATGCTGTTT GCCGATGCGC GCAAGCTGCC GGCCGGCAAC
GGCACGGTGG CGGCAAAGGT CGAGGGCCGC AACGTGGTGG TGCAGACCGG CCTCAGCACG
CGCGACATGG GCGCGCCGGG GCTCTATGCG CTCGACCTCT CGGCCATCAC GCGCGACACG
CTCGACCGCA AGGTGCGCCT GCGCATCGAG GGCAAGCAAC TGCTGCCCTA CTACACGCGC
GAAGAGATCG AGACCAAGGG CGCGCCCAAT GCGAAGGTGC TGGCCTTCGT GAGCAGCGCC
ACCGCGCTCT ACGAAATGCA GATCCAGGGT TCGGGCCGCA TCAAGCTGGC CAACGGCGAC
ATCATCCGCG TGGCCTATGC CGAGCAGAAC GGCCAGCCCT TCCGCCCCAC GCTGGCGCAG
GCGGCCAACG GCAAGCCGCG CAGCCCGGTC AAGGTGCGCG GCTCGTCGAT CGAACTGCAG
CTCGACGACG GCGACGAGGA CGACGACGTT GGCGGCCCCG CGACCGGCAC CATCCGCACG
CGCGGCTTCA CGCTTGCGCA GCCCACGGCC AGCGGCGCGG TGCTGGTGCC GGGGCGGCGC
ACGGCCGGGC CGGTGGTCGG CTCGGGCATC AAGGACCCGA GCTACGTGTT CTTCAAGGAG
TCGCCGTCGC CTTCGGGCGG GCCGGTGGGC GCCTTCGGCG TGCCGCTGTC GGCGGGCCGC
TCGATCGCGG TGGACCCGCG CAGCACGCCG CTGGGCTACC CGGTGTTCGT GTCGACCCGC
GCGCCCGGCA CCGGCGCGCC GATGCAGCGG CTGACCATTG CGCAGGACAC CGGCGGCGCG
ATCCGCGGCG CGGTGCGGGC CGACTATTTC TTCGGCAACG GCCAGCAGGC CGCGACCAAC
GCGCGCCGCA TGAAGGAGCG CGGCCAGCTC TGGATCTTGC TGCCGCGCGG CCTGGCGGTG
GCCACGGCGG CGGTGTCCTC GGCCATCCGC ACGCGCGGCG GCCCGGCGGG CGCCGGCCTG
CCGCAGTGCC TGGTGCCGAC CGAAGGCGTG TGCGTGGACG ACTGA
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| Protein sequence | MNTTLSPVLF ISALRWAATA AAMLAAGCAN TPPTASAGAS DTAASAAAAG STTATLPPPR
PAGSSTAGQA RTFSTQLATY TSVSFDAVPG WARDDFSESW PAFLGSCKVL TGRGAEWKDV
CARALRVDSK NNSAIRAFFE QEFSAYQIRD DDRKPDGVVT GYFEPEIPGS RQYAAPFIYP
VYGQPEDMLF ADARKLPAGN GTVAAKVEGR NVVVQTGLST RDMGAPGLYA LDLSAITRDT
LDRKVRLRIE GKQLLPYYTR EEIETKGAPN AKVLAFVSSA TALYEMQIQG SGRIKLANGD
IIRVAYAEQN GQPFRPTLAQ AANGKPRSPV KVRGSSIELQ LDDGDEDDDV GGPATGTIRT
RGFTLAQPTA SGAVLVPGRR TAGPVVGSGI KDPSYVFFKE SPSPSGGPVG AFGVPLSAGR
SIAVDPRSTP LGYPVFVSTR APGTGAPMQR LTIAQDTGGA IRGAVRADYF FGNGQQAATN
ARRMKERGQL WILLPRGLAV ATAAVSSAIR TRGGPAGAGL PQCLVPTEGV CVDD
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