Gene Vapar_0517 details

Gene Information

• Locus tag: Vapar_0517
• ID: 7972927
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 569499
• End bp: 570125
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 644791120
• Product: type VI secretion-associated protein, BMA_A0400 family
• Protein accession: YP_002942446
• Protein GI: 239813536
• COG category: [S] Function unknown
• COG ID: [COG3913] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03373] type VI secretion-associated protein, BMA_A0400 family

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGACG ACGCGGCTGT TTTTTCTGCA TTGCCCGGAT GGTTCGGCAA GCTGCCGGGC 
ATGGGCGACT TCGCGCACCG GCGCCTGCCG GAGTCGTTTC GCTCGGTGTG GGACCCGTGG 
CTGCAGCGCG GATTGGCGCG GCTGCGCGAC CGGCATGCGG ACTGGACTTC GCATTACCTC 
GAAGCGCCGG TGTGGTGCTT TGCGCTCGGG CCGCAGGTGG TTGGCGAAGG TGCATGGATC 
GGCGTGCTGA TGCCGTCGGT CGATGGGGTG GGGAGGTACT TTCCGTTCAC GCTGGCGGTG 
GGGCTCGATG CTTCTGCGGG CGGGGCGCTG CAGGGCGATG CACTGCAGGA TGCGCTGCGG 
TGGTGGGCGC GGGGGACGCG GGCTGCGCTC GAAGGGCTTG AAGGGGATCT GGATGCGCTG 
CGGTTTGATG CGGTGCTGGA GAGGGTGTTT GCTGCTGCCG GTGATCTCGA GGTGCGCGAG 
ATGGCAGTGG AGTCGCTTGC CTTGCCGGGG GTGGGGGAGT CTTTGTGGCT TGGCGATCCG 
GGGGCTGGTG ACGGGGCTCG GATGCTTGTT GCGGGGTTGC CTTTGGATGG TCGGTTTGAG 
GCTTTGTTTT TGGGGGGTGG GGAATGA 

 

Protein sequence

MSDDAAVFSA LPGWFGKLPG MGDFAHRRLP ESFRSVWDPW LQRGLARLRD RHADWTSHYL 
EAPVWCFALG PQVVGEGAWI GVLMPSVDGV GRYFPFTLAV GLDASAGGAL QGDALQDALR 
WWARGTRAAL EGLEGDLDAL RFDAVLERVF AAAGDLEVRE MAVESLALPG VGESLWLGDP 
GAGDGARMLV AGLPLDGRFE ALFLGGGE