Gene Vapar_0510 details

Gene Information

• Locus tag: Vapar_0510
• ID: 7972920
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 558821
• End bp: 560710
• Gene Length: 1890 bp
• Protein Length: 629 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644791113
• Product: histidine kinase
• Protein accession: YP_002942439
• Protein GI: 239813529
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.302748
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACTGGA ACTTCCGCGT CCTCCGGGGG CTTGCGCGCC TCACCTTCGC GCAGCAGCTG 
ATCCTGCTCG CGCTGGTGCC GGCCACCGCG GCCACGCTGG CGGCCATTGC CGTGCTGACG 
CGCCAGCACC TGGACAACCT GACCGCGCTG ATGCGCGCCA ACGCGCAGAC GGTGGCCATG 
CAGGTGGCCA CCGCGGCGCA GACGCCGCTG CTGCGCATGG ACCGCCGCAT GCTGCAGCGC 
ACCGCCCAGT CGGGCACCTA CCAGCCGCAC GTGCAGCAGG TGCAGATCTG GTCGGAGGAC 
GGCGAGATCG TCGCCAACTC CGAGACCGTC GACCGCGCGC GCGGCGATGG CCTGCAGGTG 
GTGGTGCCGA TCGTCAGCGA CGAGGGCCGC CAGAGCGGCA AGGTGATGGT GGAGATGAGC 
CTGGACGCGG TGCAGGACGC GCGCCGCTCG GTGTGGCTCA ACGTGGTGCT GGTGCTGGCG 
ATCAGCCTGG TGGGCGTGGG CCTGGCGGGC TGGTGGGCGG CGCGGCGCAT CAGCGAGCCG 
ATCCGCGCGC TCGGCAGGGC CGTGGACCGG CTGGGCGCGG GCGAGGCCGC GAGCGTGGCC 
ATCGAAGGCA CCTCCGAGAT CCGGCACCTG CAGCACGGCT TCAACCAGGC GGCGCGCGCG 
CTGGCCGAGA GCCATCGCCT GCTGCAAAGC CGCATCAGCG AAGCCACTGC CGAGCTCGCG 
CGCAAGAACC AGCAGCTCGA AGTGGCAAGC CAGGCCAAGA CGCGCCTGCT GGCCGCGGCC 
AGCCATGACC TGCGCCAGCC GCTGCATGCG CTCACGCTCT TTTCCGACGG GCTGGCCAAC 
GGCGAGACCG ACCCGCTGCG GCTGCAGCGC ATCGGCCACA TCCGCGAGTG CGTCGATTCG 
CTCGACCGGC TGTTCTCCGA GCTGCTCAAT CTCTCGCAGC TCGACGCCGG CGTGCTGCAG 
CCGCAGTGGG CCGACTTTCC GCTGGACCGG CTGTTCGACG AGATCAGCCG CAACTTCCGG 
CCGGTGGCCG AGCAGCAGGG CCTGCGGCTG GTGGCGCGCA AGACCGAGCT CTGGGTGCGC 
TGCGACTACG TGATGCTCTC GCGCATCCTC AACAACCTGG TGTCGAACTC GCTGCGCCAC 
ACGCTCGAGG GCGGCGTGCT GATCGGCGCG CGGCGGCGCG GCAAGGGGGT TCGCATCGAC 
GTGGTCGACA CCGGCGTGGG CATCGCGCCG CAGCACCAGG CGCGCGTGTT CGAGGAGTTC 
TACCAGGTGG AGACCACGGG CCGCCAGGCA CCGCGCGGCG CGCGCGGCAT GGGCCTCGGG 
CTGGCCACGG TGCAGCGCCT GGCGGAGCTG CTCAACACGC GCGTCGACCT CACGTCCAGG 
CCGCACAAGG GCACCTGCGT GCGCGTGCTG GTGCGCTCGG CGCCGGCCGC GCTGCCGCAG 
CCGGCCGCCG CACCCGCCGC CGGCGGTACC GAAGAAGAAG CGAGCTTGGA GAACCTGCGC 
ATCCTGGTGA TCGACGACGA GCGCACCATC CTCGAAGGCC TGACGGTGGT GCTCACCCAC 
TGGGGCGCCG AAGTGCTGGC CGCGCAGACG CGCGCCGAAG CGCTGGCGCT GGCCGACACC 
TGGGAGCAGC CGCCCGACGT GGTGGTGAGC GACCTGCTGC TGCAGGGCGG CGACAACGGC 
CTGGACGTGA TCGCCGCGCT GGAGCGCCAC CCGCGCGGCA TCGGCCCGGG CACGGCGCGG 
CTGCTGGTCA CGGGCGAGAC CAAGCCGGAC CGCTTGCGCG AAGTGGCGAG CGCCGGCATC 
GCGGTGCTCT ACAAGCCGGT GTCGCCGCGC GTGCTGCGCC AGGCGATCCA GGCGCAGCGC 
GCCGCGGCGC TGTCCAACGC CGACGCCTGA 

 

Protein sequence

MNWNFRVLRG LARLTFAQQL ILLALVPATA ATLAAIAVLT RQHLDNLTAL MRANAQTVAM 
QVATAAQTPL LRMDRRMLQR TAQSGTYQPH VQQVQIWSED GEIVANSETV DRARGDGLQV 
VVPIVSDEGR QSGKVMVEMS LDAVQDARRS VWLNVVLVLA ISLVGVGLAG WWAARRISEP 
IRALGRAVDR LGAGEAASVA IEGTSEIRHL QHGFNQAARA LAESHRLLQS RISEATAELA 
RKNQQLEVAS QAKTRLLAAA SHDLRQPLHA LTLFSDGLAN GETDPLRLQR IGHIRECVDS 
LDRLFSELLN LSQLDAGVLQ PQWADFPLDR LFDEISRNFR PVAEQQGLRL VARKTELWVR 
CDYVMLSRIL NNLVSNSLRH TLEGGVLIGA RRRGKGVRID VVDTGVGIAP QHQARVFEEF 
YQVETTGRQA PRGARGMGLG LATVQRLAEL LNTRVDLTSR PHKGTCVRVL VRSAPAALPQ 
PAAAPAAGGT EEEASLENLR ILVIDDERTI LEGLTVVLTH WGAEVLAAQT RAEALALADT 
WEQPPDVVVS DLLLQGGDNG LDVIAALERH PRGIGPGTAR LLVTGETKPD RLREVASAGI 
AVLYKPVSPR VLRQAIQAQR AAALSNADA