| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0509 |
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| Symbol | |
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| ID | 7972919 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 557601 |
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| End bp | 558578 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644791112 |
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| Product | ABC-type uncharacterized transport system periplasmic component-like protein |
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| Protein accession | YP_002942438 |
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| Protein GI | 239813528 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2984] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.150432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGCAGC CCGCCGCCAG TGCCTCGGCG ACCGAGCTCA CGGTGCTGAT GGGCGACGAG
CTCCCGGCGC ATGCCGAGTT CGTGCAGCAC CTTCGCGCGA GCCAGGAGCC CGGCAGCCGC
TTCGAGCTGG TGCGGCTCGC GCCAGGCGGC GCCGAAGCGG CGCAGCCGGT GGAAACGGCG
CGCGCCGAAG CCGAGTCCGA ACGCGGCGCC AATGCCGGCG TGCGCACGCG CAGCCTGCGC
ACCGCGCCCG CGAACGCCGC GCTCACCCTC GCGGTCGGCG CGCCCGCCGC ACGCGCCGCG
CTGGAGCGCC CGGGCCAACA GCCGCTGGTG CTCGCGATGC TGAGCCGGCT CGACTACGAA
AGCCTTCGCG CCAGCAGCCC GGCGCTCAGG CGCGGCGACC GGCGCGTGGG CGTGCTGCTG
CGCGACCCGG CCATGGCGGA CCAGCTCGCG CTGATCGGCG CGGTGCTGCC GCAGAAGCAC
CGCATCGGCG TGGTTGCCAC ACCTGAATCC GAACCGCTGG TGCGCGAGCT GCAGCGCGCC
GCGCAGAACG GCAATCCACC GTGGGACATC CAGGTGGAGT ACGCGCCCGA CGACAGGTCG
CTGGCCGGCG CGCTGCGCTC GGTGGTGCCG CGCAGCGATG CCCTGCTGGT GCTGCCCGAC
CTGATCGGCG ACAACCAGGC CGCCACGCTG TCGGTGCTGC GCGCCGGCGC CGGCGCGGGG
CTGCCGGTGT TCGGCGCCAG CGAAGGGCTG GTGCGTTCGG GCGGCCTGGC CGCGGCCGTC
TCCACGCCGG CGCAGCTGGC CCAGCAGGCG CGCCTGCTCG GGCAGAAGCT CTCGAGCGGC
GCCGGCGGCA GCGGCAATCC GCTGGTGGAA TCGGCCGCGC CCGCGACCGT GCGGGTCAAT
GCCACGGTGG CGCGCGGACT CGGCCTGCGC CTGCCCGAGG AGCGGGAACT GACCGAGCGG
CTCACGGTCG TGCGATGA
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| Protein sequence | MAQPAASASA TELTVLMGDE LPAHAEFVQH LRASQEPGSR FELVRLAPGG AEAAQPVETA
RAEAESERGA NAGVRTRSLR TAPANAALTL AVGAPAARAA LERPGQQPLV LAMLSRLDYE
SLRASSPALR RGDRRVGVLL RDPAMADQLA LIGAVLPQKH RIGVVATPES EPLVRELQRA
AQNGNPPWDI QVEYAPDDRS LAGALRSVVP RSDALLVLPD LIGDNQAATL SVLRAGAGAG
LPVFGASEGL VRSGGLAAAV STPAQLAQQA RLLGQKLSSG AGGSGNPLVE SAAPATVRVN
ATVARGLGLR LPEERELTER LTVVR
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