Gene Vapar_0504 details

Gene Information

• Locus tag: Vapar_0504
• ID: 7972914
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 547291
• End bp: 552825
• Gene Length: 5535 bp
• Protein Length: 1844 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644791107
• Product: filamentous hemagglutinin family outer membrane protein
• Protein accession: YP_002942433
• Protein GI: 239813523
• TIGRFAM ID: [TIGR01901] filamentous haemagglutinin family N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGAAACC ATGATCTTTC CGCGAAAGCC CTGCCGCGGC ACTGGCGCGT GCGGCCGCTC 
GTGCTGTCGC TGGCCTGCAT GGGCATGGTG CCGGCCTGGG CGCAGCTCAA CCTGCCGGCG 
GGCTTTCCGC AGAGCGGCAA TGTGGTGTTC GGCAATGTGA GCGTCGCTCC TCTCGGCACG 
GCGGCCGTGC AGAGGCTCAA CCAGAGCACG ATGAACGCCA TCGTCAACTG GAACGCGTTT 
TCGCTGGACG GCGGCAAGAC GCTCAACATC GTCCAGCAGA TGGGCGCCGC GAGCGTGATG 
CTCAACCGCG TGGTGGGCAG CGGCGGCGTG ATCGAGCAGT CGGTCATCAA CGGCACGCTG 
TCGGCCAACG GGCATGTGTT CGTGGTCAAT CCCTCGGGCG TTCTCTTCGG CGGCAGCGCC 
CAGGTGAACG TCGGCGGGCT GGTGGCCTCC ACGCTGGACA TCAGCGACAG CCAGATCGCC 
AAGGAGGGCA GCGTGGTGGG CAAGGGCGGC CAGCTGCTGT TCGGCGGCGG CATCAACGAT 
GCCAACAGCA CCGCCCGCGT GACGGTCCAA CCCGGCGCGG TCATCAGCGT GGGCGAAGGC 
GGCACGCTCG GGCTGATCGG CGCGCTGGTG CGCAACGAGG GCAATATCAA CGTGGCGCGC 
GGCTCGGCGG GCCTGGTGTC GGGCGCGCGG GTGACGCTGG ACTTCGAAGG CGACGGGCTG 
ACCAAGTTCA CGGTGCCGCT CGAAGGCGGG CTCATGAACA CCTCGGTGGC CGGCGTGCAG 
GCGACCGATC CCACCACCAA GGCGCTGGTG ATGAACACCG GCACCATCAC GGCCGATGGC 
GGGCGCGTGG TGCTGGTGGG CGCCTCCGGG CTGGTGCAGC AGGTGGTCAA CCAGAGCGGC 
ACGGTGCGCG CGCGTTCGCT GGTCGAGCGC GGCGGCGAGA TCGTGCTGGA GGCCATCGGC 
GCCCAGGTCG ACAGCGGCGC GGGCCTCGAG GTGAGCGGCC CGCTGGATGC ACGCGGCAAT 
GCGCCCGGCG TGGCCGGCGG CAGCATCCGC ACCACGGCCG GCAACCTCAA TGTGCTGGCG 
GGTACGCAAA TCGATGCCGG CGGCAATGCA GGCGCCAACG GCAGCTGGAC GGCCGAGGCG 
GGCCGCAATC TCTCGATCGT GGCCGATGCC GATTCCGGCA ACATCGCGGC CAGCGTGATC 
GGCAAGGCCC TGAGCCAGGG CACCGACGTG ACGCTGACCA CGCGCTCGTC CAGCAAGGTG 
GCGCAGATCA ACGACGCCGT CGTGTTCCAG CCCGGCGCCC AGGTGATCAA GGACGGCGGC 
GGCGCGGCCA CGCTGCGCGT GAATTCGGTG GGCAACATCG ACATGCGCTG GGCGGTGGAG 
GGCGGCGGCG CAACCATCGC TTCCACCAGC GGTGCGCTGA ACGTCGATTT CAATGCCGAC 
GCGCAGGGCC TGGCCGCCGC CGAGGCCGGC CAGGCCAACG GCATTGCGGC GGCCATCCGG 
CTGGACCGCG CGCGCATCGA TGCCAACGGC GGGAACATCC GCTTCTTCGG GCAGGGCGAC 
AGCGACAACG GGCGGGCGAT CGGCGGTCAG GTCAAGGGCC CGGGTGCCGA CGGCGCCGGC 
GAAATCCGCA GCGGCGTCTG GCTGGGCGGC AGCGCCTTGA GCACGCTCGG CGCGGGGAGC 
ATCTTGCTGC GCGGCGAAGG CGGCACCGGC GAGGTGGGCA GCGGCTTCCT GAGCGCCACC 
GACGGCGTGC GCATCGACGG CGACAGCACG CTCGGCACGC AGGCCGGCGG CATCACGCTG 
GCCGGCCGCG GCGCCGCGGG AGGCTCGGGC GTGCGGCTGA ACGGCGACGA CTATTCGGTC 
GCCCTGTCTT CCGCAAGCGG CAATATCGCC CTGACCGGCA CGGTGCGCGA CTGGACCAGC 
GGCGGCCCGG TCGGCGAGCC GCCGGATGGT GCCGGCGTGC AGATCACCGG CTCCATATTG 
ACCACCGGCG GCGATGTGCG CATCACGGGC CAGGGCGGCG ACCTGTCGGG CATGGCCGCC 
GGCCTGCGCA CGCAAGCCGT CGAATTGAGC ACCAGCTACA CCGTGGGCGC CTCGAATGGC 
GTGGCGATCG ACGGCACGCG CATCGAGGCC GGCGCGGGCC GCAGCATCGC GATCACCGGC 
ACGGCCGGGA GCGCGGGCTT CGGCTACGAC GGCACGGGCG CGGCGCTGGG CTTCGCGCCG 
CTGGACGCGA CGGTCACTCC GTTTGGCGTG CGGCTTTCGT CCTCCCAGCA GGCCGACGGG 
CTGCATGCCG CGGGCGGCAG CATCCGGATC GCGGCCGGCA CCGGCGACGT GAGCCTGGTG 
GCCGGCGCCT TCGAGGGCAC GCTGCTCGAT GCCGCCAGTG CCACCGGCAT GGGCGGCAGC 
ATCGGCGTGA CGGGGCGCAA CATCCTCGCG CAATCGACGG CGGACAGCAG CGGCCTGGCG 
GACGCCAGCG GCGCGGGCGG CGGCGGCAGC ATCGAGATCC GCGGCAGCAC CGCGGCCGGC 
GCCGGCAACG AGAACACGGG CGTGGTCTCG GTCGGCCCGA ACCTCACGCT GCTGGCCAAC 
GCCCTGGGCA GCGGCAACGG CGGCAGCATC ACCCTCGTGG GCGAGCGCTC GGTGCGCGCC 
TTCGGCGACC TGCAGGCGCG GGGCGGCAGC GCCGGCGGCA ATGGCGGCAC GATCGAGACC 
TCGGGCGGCT CGTTCGACGT GAGCGGCATC CGCATCGACG CCTCGGCGCC GGCCGGCCTG 
GCGGGGCGGT GGATCGTCGA CCCGTATGAC GTCACCATCG TCCACGGCGT GGCCGGCGGC 
GGCAGCCTGC CCACCAACCC CTTCGATCCG GTGGCCACCT CGACCATCCA GGACGGAGAC 
ATCAACGGCG CGCTGAACAC CGGCACCAGC GTGAGCATCA CCACCGGCAG CGGCGGCACC 
GATGCGGGCG ACATCCGCTT TGGCAGCGGC ATGGTGATCG AGCGCACGGT GGGCAGCGCG 
CCGCTGGTGT TCGAGCTGAA CGCGGCGCAC TCGATCGGCG ACCGCGTGTT TTCCAGCTCG 
TACCTGGCGC CGATCATCCG TTCGACCACG GGGCCGATGG ACGTGATCTT CAATGCCGGC 
TCGGCCGGGG CGCTCGACGG CTATGTCCAT TACTTCGGCA ATACGGGGGC CGACCAGGCC 
GTCATCTCCA CCAACGGCGG CAGCGTGCTG GCGCACGCCA CGGGCACGGG CTATGCCGAA 
GTGGTCTTCA ACTCCGCCAG CATCGACGCC GGCGGCGGCA ACCTGAGCCT TGTGACGGAC 
GGGCCGAGCA GCACCCAGTT CGTCGCGTTC AGCGGCGACG TGCACACGCG CGGCGGCAGC 
GTCACGCTGG ACTCCGGCTT CGTCGGCGCC AGCCCCGCGT TCAGCGACAT CAACATCGAC 
GTGGACGGCA CCATCGACAC GGGCGGCGGC GCGGTGTCCA TCCATGCGCA TGGCGTGGGC 
GGCATCTACG ATTCGGTGAC CAGCCGCTTC AACAACCAGA TCATCACCGA CGGCGGGGCG 
GTGTCGATCC TGAACGGGCA GACCGGCGCG CCCTCGGGCT TCGTGCTGCT CCAGGGCACC 
CGGATCGACA CGCGCGTCGG CCAGTCCGAT GCGGGCGCCG GCGGCGACGT GAGCATCGCC 
GGCGGCGGCG TGAGCATCAA CGGCGCGCGC ATCGACAGCG CCACCGGCGA CGTGGCGATC 
ACCGGGACCG GCGGCACGGG CCAGAGCGGC AGCGCGGTGC AGCTGGATTC GCTGTTCCTG 
CGGGCCGTGG GCGTTCCGGT TCCCACCGCC ATCTCGACCA CCAGCGGCAA CGTGCTGGTG 
CGGGGCGTGC AGGACTTCAA CCGCGGCTCG AGCGCATTCA ATGCGACGCA TGGCGTGCTG 
GTCACCGGCG GCAGCAGCAT CACGACCGGC AGCGGCAACA TCGCGCTGCA GGGCCTGTTT 
GCCAGCGCGG TGGTCGACGG CACCGACAGC GGCGTGCGGC TGGAAAACGG CGCGCGCCTG 
GCAACCACCG GCGGCGGCAG CATCGAGCTG ACCGGCAGCT CGCTGCAGGG CACGCCCGGC 
GTGTCGATCC AGACCGGCCT CTTGTCCACC GGCGCTCCCG GCGCGGCGCC GCAGGTGCAA 
AGCAGCGGCA ACCTGGTGCT GCGCGCCAGC AACGACGGCA GCGCGCCGGC CCTGGCCATC 
GACGTGCCGG TGAGCGCCGC CGGCACCATC AACCTGCGGC CGGGCGGCAT GGACGCGGCG 
CTCAATGCCT TCGACGCCAC GGCCGCCGGC ATCACCGTGG GCGGTGCGGC GGGGGGCGGG 
TTCACGCTGT CGGATGCGCT GATGTCGCGC CTGAATGCGC CCAGCGTGGT GGTGGGCAGC 
AACACGCACG CAGGCACCAT CACCGTGGCC GGCGCGCTGA CGAGCGCCGG CGCGCTCACG 
CTGCAGAACG AAGGCGTGGG CGCCGGCGCC GGCGGCATCG TGCTGAACGG CGCCGTCACG 
GCGGACCGCC TGGGCCTGCT CTCGGCCGGC GACATCACGC AGACGGTGAA AGCACCGATC 
ACCGCCCAGC ACCTGCTGGC GCGCTCCAGC CGCGGCAGCG TGCTGCTGGA CCGGGCGGCC 
AACAACGTGA GCGAGAACAC GCTGGGCGGC GGCGCCGCCG GCGCCTTCCG CTACCAGGAC 
GTGGACGGCG TGCGCATCGG CGCGCTGTCG GTCACCGGCT TCGACGCCGG CAGCAACCAG 
CCGCAGCTGG TGTCGGCCAC CTCGATGGCG GCCGACACGG TGTTCGTGCG AACGCTCTCG 
GGCGACCTCA CGCTGGACAC CGCCGTCACC AGCAGCTCGG GCACCGACCT GGTGGCCGCG 
GCGCGCTTCC AGAATGCGGG CGGCGGCAGC ATCGGCGGCG CGCCCTGGCG CATCTGGGCC 
GACACCTGGG TGGGCGAATC GCGCGGCGGC CTCGCCGGCT CGGGCGCCAC GCCCAACCTG 
TTCCACTGCG CCTACCTGGG GCTGTGCACC GTGACCATCA CGCCGGGCGA CAACCACTTC 
ATCTACGCCC AGCAGCCGCG GGCCACGGTG GTCATCGGCG ACGCCAGCCG TCCCTTCGGC 
ACGGCCAACC CGCCCTTCGG CTTCACCATC GGCGGGCTGA TCCTGGGCGA CGGCACGGCC 
GGCTTCCTGG GCACGCCCAC GAGCGCGGCC GGCATCTTCA GCCCCGCGGG GCGCTATGGC 
ATCAACGGCA GCTTCACCTC GGCGGCCGGC TATGCGGTGG ACGTGGTGCC CGGCACGCTG 
ACCGTGACGG CCAGCCTGCG CCGGCCCGAC TTCCCGGGCT CGGACCTGGT GCGCGAGCTG 
CCCAACACCA ACACCTACAC CTTCGACCGC AACCTTGGCG CGCCGCCGAT CTGCTTTGCC 
ACCGGGCCGC TGGAGGGCGA CCGTGCGCAG CAGGACGGCG ACCTGCTGGC GCGCGAATGG 
TCGCGCGTGC GTTCGCGGCC CAACCTCACC AGCTGCGTGG CCACCGACCG CAAGAACGGC 
TGCGCCGATT TCTGA 

 

Protein sequence

MRNHDLSAKA LPRHWRVRPL VLSLACMGMV PAWAQLNLPA GFPQSGNVVF GNVSVAPLGT 
AAVQRLNQST MNAIVNWNAF SLDGGKTLNI VQQMGAASVM LNRVVGSGGV IEQSVINGTL 
SANGHVFVVN PSGVLFGGSA QVNVGGLVAS TLDISDSQIA KEGSVVGKGG QLLFGGGIND 
ANSTARVTVQ PGAVISVGEG GTLGLIGALV RNEGNINVAR GSAGLVSGAR VTLDFEGDGL 
TKFTVPLEGG LMNTSVAGVQ ATDPTTKALV MNTGTITADG GRVVLVGASG LVQQVVNQSG 
TVRARSLVER GGEIVLEAIG AQVDSGAGLE VSGPLDARGN APGVAGGSIR TTAGNLNVLA 
GTQIDAGGNA GANGSWTAEA GRNLSIVADA DSGNIAASVI GKALSQGTDV TLTTRSSSKV 
AQINDAVVFQ PGAQVIKDGG GAATLRVNSV GNIDMRWAVE GGGATIASTS GALNVDFNAD 
AQGLAAAEAG QANGIAAAIR LDRARIDANG GNIRFFGQGD SDNGRAIGGQ VKGPGADGAG 
EIRSGVWLGG SALSTLGAGS ILLRGEGGTG EVGSGFLSAT DGVRIDGDST LGTQAGGITL 
AGRGAAGGSG VRLNGDDYSV ALSSASGNIA LTGTVRDWTS GGPVGEPPDG AGVQITGSIL 
TTGGDVRITG QGGDLSGMAA GLRTQAVELS TSYTVGASNG VAIDGTRIEA GAGRSIAITG 
TAGSAGFGYD GTGAALGFAP LDATVTPFGV RLSSSQQADG LHAAGGSIRI AAGTGDVSLV 
AGAFEGTLLD AASATGMGGS IGVTGRNILA QSTADSSGLA DASGAGGGGS IEIRGSTAAG 
AGNENTGVVS VGPNLTLLAN ALGSGNGGSI TLVGERSVRA FGDLQARGGS AGGNGGTIET 
SGGSFDVSGI RIDASAPAGL AGRWIVDPYD VTIVHGVAGG GSLPTNPFDP VATSTIQDGD 
INGALNTGTS VSITTGSGGT DAGDIRFGSG MVIERTVGSA PLVFELNAAH SIGDRVFSSS 
YLAPIIRSTT GPMDVIFNAG SAGALDGYVH YFGNTGADQA VISTNGGSVL AHATGTGYAE 
VVFNSASIDA GGGNLSLVTD GPSSTQFVAF SGDVHTRGGS VTLDSGFVGA SPAFSDINID 
VDGTIDTGGG AVSIHAHGVG GIYDSVTSRF NNQIITDGGA VSILNGQTGA PSGFVLLQGT 
RIDTRVGQSD AGAGGDVSIA GGGVSINGAR IDSATGDVAI TGTGGTGQSG SAVQLDSLFL 
RAVGVPVPTA ISTTSGNVLV RGVQDFNRGS SAFNATHGVL VTGGSSITTG SGNIALQGLF 
ASAVVDGTDS GVRLENGARL ATTGGGSIEL TGSSLQGTPG VSIQTGLLST GAPGAAPQVQ 
SSGNLVLRAS NDGSAPALAI DVPVSAAGTI NLRPGGMDAA LNAFDATAAG ITVGGAAGGG 
FTLSDALMSR LNAPSVVVGS NTHAGTITVA GALTSAGALT LQNEGVGAGA GGIVLNGAVT 
ADRLGLLSAG DITQTVKAPI TAQHLLARSS RGSVLLDRAA NNVSENTLGG GAAGAFRYQD 
VDGVRIGALS VTGFDAGSNQ PQLVSATSMA ADTVFVRTLS GDLTLDTAVT SSSGTDLVAA 
ARFQNAGGGS IGGAPWRIWA DTWVGESRGG LAGSGATPNL FHCAYLGLCT VTITPGDNHF 
IYAQQPRATV VIGDASRPFG TANPPFGFTI GGLILGDGTA GFLGTPTSAA GIFSPAGRYG 
INGSFTSAAG YAVDVVPGTL TVTASLRRPD FPGSDLVREL PNTNTYTFDR NLGAPPICFA 
TGPLEGDRAQ QDGDLLAREW SRVRSRPNLT SCVATDRKNG CADF