Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0504 |
Symbol | |
ID | 7972914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 547291 |
End bp | 552825 |
Gene Length | 5535 bp |
Protein Length | 1844 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644791107 |
Product | filamentous hemagglutinin family outer membrane protein |
Protein accession | YP_002942433 |
Protein GI | 239813523 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAACC ATGATCTTTC CGCGAAAGCC CTGCCGCGGC ACTGGCGCGT GCGGCCGCTC GTGCTGTCGC TGGCCTGCAT GGGCATGGTG CCGGCCTGGG CGCAGCTCAA CCTGCCGGCG GGCTTTCCGC AGAGCGGCAA TGTGGTGTTC GGCAATGTGA GCGTCGCTCC TCTCGGCACG GCGGCCGTGC AGAGGCTCAA CCAGAGCACG ATGAACGCCA TCGTCAACTG GAACGCGTTT TCGCTGGACG GCGGCAAGAC GCTCAACATC GTCCAGCAGA TGGGCGCCGC GAGCGTGATG CTCAACCGCG TGGTGGGCAG CGGCGGCGTG ATCGAGCAGT CGGTCATCAA CGGCACGCTG TCGGCCAACG GGCATGTGTT CGTGGTCAAT CCCTCGGGCG TTCTCTTCGG CGGCAGCGCC CAGGTGAACG TCGGCGGGCT GGTGGCCTCC ACGCTGGACA TCAGCGACAG CCAGATCGCC AAGGAGGGCA GCGTGGTGGG CAAGGGCGGC CAGCTGCTGT TCGGCGGCGG CATCAACGAT GCCAACAGCA CCGCCCGCGT GACGGTCCAA CCCGGCGCGG TCATCAGCGT GGGCGAAGGC GGCACGCTCG GGCTGATCGG CGCGCTGGTG CGCAACGAGG GCAATATCAA CGTGGCGCGC GGCTCGGCGG GCCTGGTGTC GGGCGCGCGG GTGACGCTGG ACTTCGAAGG CGACGGGCTG ACCAAGTTCA CGGTGCCGCT CGAAGGCGGG CTCATGAACA CCTCGGTGGC CGGCGTGCAG GCGACCGATC CCACCACCAA GGCGCTGGTG ATGAACACCG GCACCATCAC GGCCGATGGC GGGCGCGTGG TGCTGGTGGG CGCCTCCGGG CTGGTGCAGC AGGTGGTCAA CCAGAGCGGC ACGGTGCGCG CGCGTTCGCT GGTCGAGCGC GGCGGCGAGA TCGTGCTGGA GGCCATCGGC GCCCAGGTCG ACAGCGGCGC GGGCCTCGAG GTGAGCGGCC CGCTGGATGC ACGCGGCAAT GCGCCCGGCG TGGCCGGCGG CAGCATCCGC ACCACGGCCG GCAACCTCAA TGTGCTGGCG GGTACGCAAA TCGATGCCGG CGGCAATGCA GGCGCCAACG GCAGCTGGAC GGCCGAGGCG GGCCGCAATC TCTCGATCGT GGCCGATGCC GATTCCGGCA ACATCGCGGC CAGCGTGATC GGCAAGGCCC TGAGCCAGGG CACCGACGTG ACGCTGACCA CGCGCTCGTC CAGCAAGGTG GCGCAGATCA ACGACGCCGT CGTGTTCCAG CCCGGCGCCC AGGTGATCAA GGACGGCGGC GGCGCGGCCA CGCTGCGCGT GAATTCGGTG GGCAACATCG ACATGCGCTG GGCGGTGGAG GGCGGCGGCG CAACCATCGC TTCCACCAGC GGTGCGCTGA ACGTCGATTT CAATGCCGAC GCGCAGGGCC TGGCCGCCGC CGAGGCCGGC CAGGCCAACG GCATTGCGGC GGCCATCCGG CTGGACCGCG CGCGCATCGA TGCCAACGGC GGGAACATCC GCTTCTTCGG GCAGGGCGAC AGCGACAACG GGCGGGCGAT CGGCGGTCAG GTCAAGGGCC CGGGTGCCGA CGGCGCCGGC GAAATCCGCA GCGGCGTCTG GCTGGGCGGC AGCGCCTTGA GCACGCTCGG CGCGGGGAGC ATCTTGCTGC GCGGCGAAGG CGGCACCGGC GAGGTGGGCA GCGGCTTCCT GAGCGCCACC GACGGCGTGC GCATCGACGG CGACAGCACG CTCGGCACGC AGGCCGGCGG CATCACGCTG GCCGGCCGCG GCGCCGCGGG AGGCTCGGGC GTGCGGCTGA ACGGCGACGA CTATTCGGTC GCCCTGTCTT CCGCAAGCGG CAATATCGCC CTGACCGGCA CGGTGCGCGA CTGGACCAGC GGCGGCCCGG TCGGCGAGCC GCCGGATGGT GCCGGCGTGC AGATCACCGG CTCCATATTG ACCACCGGCG GCGATGTGCG CATCACGGGC CAGGGCGGCG ACCTGTCGGG CATGGCCGCC GGCCTGCGCA CGCAAGCCGT CGAATTGAGC ACCAGCTACA CCGTGGGCGC CTCGAATGGC GTGGCGATCG ACGGCACGCG CATCGAGGCC GGCGCGGGCC GCAGCATCGC GATCACCGGC ACGGCCGGGA GCGCGGGCTT CGGCTACGAC GGCACGGGCG CGGCGCTGGG CTTCGCGCCG CTGGACGCGA CGGTCACTCC GTTTGGCGTG CGGCTTTCGT CCTCCCAGCA GGCCGACGGG CTGCATGCCG CGGGCGGCAG CATCCGGATC GCGGCCGGCA CCGGCGACGT GAGCCTGGTG GCCGGCGCCT TCGAGGGCAC GCTGCTCGAT GCCGCCAGTG CCACCGGCAT GGGCGGCAGC ATCGGCGTGA CGGGGCGCAA CATCCTCGCG CAATCGACGG CGGACAGCAG CGGCCTGGCG GACGCCAGCG GCGCGGGCGG CGGCGGCAGC ATCGAGATCC GCGGCAGCAC CGCGGCCGGC GCCGGCAACG AGAACACGGG CGTGGTCTCG GTCGGCCCGA ACCTCACGCT GCTGGCCAAC GCCCTGGGCA GCGGCAACGG CGGCAGCATC ACCCTCGTGG GCGAGCGCTC GGTGCGCGCC TTCGGCGACC TGCAGGCGCG GGGCGGCAGC GCCGGCGGCA ATGGCGGCAC GATCGAGACC TCGGGCGGCT CGTTCGACGT GAGCGGCATC CGCATCGACG CCTCGGCGCC GGCCGGCCTG GCGGGGCGGT GGATCGTCGA CCCGTATGAC GTCACCATCG TCCACGGCGT GGCCGGCGGC GGCAGCCTGC CCACCAACCC CTTCGATCCG GTGGCCACCT CGACCATCCA GGACGGAGAC ATCAACGGCG CGCTGAACAC CGGCACCAGC GTGAGCATCA CCACCGGCAG CGGCGGCACC GATGCGGGCG ACATCCGCTT TGGCAGCGGC ATGGTGATCG AGCGCACGGT GGGCAGCGCG CCGCTGGTGT TCGAGCTGAA CGCGGCGCAC TCGATCGGCG ACCGCGTGTT TTCCAGCTCG TACCTGGCGC CGATCATCCG TTCGACCACG GGGCCGATGG ACGTGATCTT CAATGCCGGC TCGGCCGGGG CGCTCGACGG CTATGTCCAT TACTTCGGCA ATACGGGGGC CGACCAGGCC GTCATCTCCA CCAACGGCGG CAGCGTGCTG GCGCACGCCA CGGGCACGGG CTATGCCGAA GTGGTCTTCA ACTCCGCCAG CATCGACGCC GGCGGCGGCA ACCTGAGCCT TGTGACGGAC GGGCCGAGCA GCACCCAGTT CGTCGCGTTC AGCGGCGACG TGCACACGCG CGGCGGCAGC GTCACGCTGG ACTCCGGCTT CGTCGGCGCC AGCCCCGCGT TCAGCGACAT CAACATCGAC GTGGACGGCA CCATCGACAC GGGCGGCGGC GCGGTGTCCA TCCATGCGCA TGGCGTGGGC GGCATCTACG ATTCGGTGAC CAGCCGCTTC AACAACCAGA TCATCACCGA CGGCGGGGCG GTGTCGATCC TGAACGGGCA GACCGGCGCG CCCTCGGGCT TCGTGCTGCT CCAGGGCACC CGGATCGACA CGCGCGTCGG CCAGTCCGAT GCGGGCGCCG GCGGCGACGT GAGCATCGCC GGCGGCGGCG TGAGCATCAA CGGCGCGCGC ATCGACAGCG CCACCGGCGA CGTGGCGATC ACCGGGACCG GCGGCACGGG CCAGAGCGGC AGCGCGGTGC AGCTGGATTC GCTGTTCCTG CGGGCCGTGG GCGTTCCGGT TCCCACCGCC ATCTCGACCA CCAGCGGCAA CGTGCTGGTG CGGGGCGTGC AGGACTTCAA CCGCGGCTCG AGCGCATTCA ATGCGACGCA TGGCGTGCTG GTCACCGGCG GCAGCAGCAT CACGACCGGC AGCGGCAACA TCGCGCTGCA GGGCCTGTTT GCCAGCGCGG TGGTCGACGG CACCGACAGC GGCGTGCGGC TGGAAAACGG CGCGCGCCTG GCAACCACCG GCGGCGGCAG CATCGAGCTG ACCGGCAGCT CGCTGCAGGG CACGCCCGGC GTGTCGATCC AGACCGGCCT CTTGTCCACC GGCGCTCCCG GCGCGGCGCC GCAGGTGCAA AGCAGCGGCA ACCTGGTGCT GCGCGCCAGC AACGACGGCA GCGCGCCGGC CCTGGCCATC GACGTGCCGG TGAGCGCCGC CGGCACCATC AACCTGCGGC CGGGCGGCAT GGACGCGGCG CTCAATGCCT TCGACGCCAC GGCCGCCGGC ATCACCGTGG GCGGTGCGGC GGGGGGCGGG TTCACGCTGT CGGATGCGCT GATGTCGCGC CTGAATGCGC CCAGCGTGGT GGTGGGCAGC AACACGCACG CAGGCACCAT CACCGTGGCC GGCGCGCTGA CGAGCGCCGG CGCGCTCACG CTGCAGAACG AAGGCGTGGG CGCCGGCGCC GGCGGCATCG TGCTGAACGG CGCCGTCACG GCGGACCGCC TGGGCCTGCT CTCGGCCGGC GACATCACGC AGACGGTGAA AGCACCGATC ACCGCCCAGC ACCTGCTGGC GCGCTCCAGC CGCGGCAGCG TGCTGCTGGA CCGGGCGGCC AACAACGTGA GCGAGAACAC GCTGGGCGGC GGCGCCGCCG GCGCCTTCCG CTACCAGGAC GTGGACGGCG TGCGCATCGG CGCGCTGTCG GTCACCGGCT TCGACGCCGG CAGCAACCAG CCGCAGCTGG TGTCGGCCAC CTCGATGGCG GCCGACACGG TGTTCGTGCG AACGCTCTCG GGCGACCTCA CGCTGGACAC CGCCGTCACC AGCAGCTCGG GCACCGACCT GGTGGCCGCG GCGCGCTTCC AGAATGCGGG CGGCGGCAGC ATCGGCGGCG CGCCCTGGCG CATCTGGGCC GACACCTGGG TGGGCGAATC GCGCGGCGGC CTCGCCGGCT CGGGCGCCAC GCCCAACCTG TTCCACTGCG CCTACCTGGG GCTGTGCACC GTGACCATCA CGCCGGGCGA CAACCACTTC ATCTACGCCC AGCAGCCGCG GGCCACGGTG GTCATCGGCG ACGCCAGCCG TCCCTTCGGC ACGGCCAACC CGCCCTTCGG CTTCACCATC GGCGGGCTGA TCCTGGGCGA CGGCACGGCC GGCTTCCTGG GCACGCCCAC GAGCGCGGCC GGCATCTTCA GCCCCGCGGG GCGCTATGGC ATCAACGGCA GCTTCACCTC GGCGGCCGGC TATGCGGTGG ACGTGGTGCC CGGCACGCTG ACCGTGACGG CCAGCCTGCG CCGGCCCGAC TTCCCGGGCT CGGACCTGGT GCGCGAGCTG CCCAACACCA ACACCTACAC CTTCGACCGC AACCTTGGCG CGCCGCCGAT CTGCTTTGCC ACCGGGCCGC TGGAGGGCGA CCGTGCGCAG CAGGACGGCG ACCTGCTGGC GCGCGAATGG TCGCGCGTGC GTTCGCGGCC CAACCTCACC AGCTGCGTGG CCACCGACCG CAAGAACGGC TGCGCCGATT TCTGA
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Protein sequence | MRNHDLSAKA LPRHWRVRPL VLSLACMGMV PAWAQLNLPA GFPQSGNVVF GNVSVAPLGT AAVQRLNQST MNAIVNWNAF SLDGGKTLNI VQQMGAASVM LNRVVGSGGV IEQSVINGTL SANGHVFVVN PSGVLFGGSA QVNVGGLVAS TLDISDSQIA KEGSVVGKGG QLLFGGGIND ANSTARVTVQ PGAVISVGEG GTLGLIGALV RNEGNINVAR GSAGLVSGAR VTLDFEGDGL TKFTVPLEGG LMNTSVAGVQ ATDPTTKALV MNTGTITADG GRVVLVGASG LVQQVVNQSG TVRARSLVER GGEIVLEAIG AQVDSGAGLE VSGPLDARGN APGVAGGSIR TTAGNLNVLA GTQIDAGGNA GANGSWTAEA GRNLSIVADA DSGNIAASVI GKALSQGTDV TLTTRSSSKV AQINDAVVFQ PGAQVIKDGG GAATLRVNSV GNIDMRWAVE GGGATIASTS GALNVDFNAD AQGLAAAEAG QANGIAAAIR LDRARIDANG GNIRFFGQGD SDNGRAIGGQ VKGPGADGAG EIRSGVWLGG SALSTLGAGS ILLRGEGGTG EVGSGFLSAT DGVRIDGDST LGTQAGGITL AGRGAAGGSG VRLNGDDYSV ALSSASGNIA LTGTVRDWTS GGPVGEPPDG AGVQITGSIL TTGGDVRITG QGGDLSGMAA GLRTQAVELS TSYTVGASNG VAIDGTRIEA GAGRSIAITG TAGSAGFGYD GTGAALGFAP LDATVTPFGV RLSSSQQADG LHAAGGSIRI AAGTGDVSLV AGAFEGTLLD AASATGMGGS IGVTGRNILA QSTADSSGLA DASGAGGGGS IEIRGSTAAG AGNENTGVVS VGPNLTLLAN ALGSGNGGSI TLVGERSVRA FGDLQARGGS AGGNGGTIET SGGSFDVSGI RIDASAPAGL AGRWIVDPYD VTIVHGVAGG GSLPTNPFDP VATSTIQDGD INGALNTGTS VSITTGSGGT DAGDIRFGSG MVIERTVGSA PLVFELNAAH SIGDRVFSSS YLAPIIRSTT GPMDVIFNAG SAGALDGYVH YFGNTGADQA VISTNGGSVL AHATGTGYAE VVFNSASIDA GGGNLSLVTD GPSSTQFVAF SGDVHTRGGS VTLDSGFVGA SPAFSDINID VDGTIDTGGG AVSIHAHGVG GIYDSVTSRF NNQIITDGGA VSILNGQTGA PSGFVLLQGT RIDTRVGQSD AGAGGDVSIA GGGVSINGAR IDSATGDVAI TGTGGTGQSG SAVQLDSLFL RAVGVPVPTA ISTTSGNVLV RGVQDFNRGS SAFNATHGVL VTGGSSITTG SGNIALQGLF ASAVVDGTDS GVRLENGARL ATTGGGSIEL TGSSLQGTPG VSIQTGLLST GAPGAAPQVQ SSGNLVLRAS NDGSAPALAI DVPVSAAGTI NLRPGGMDAA LNAFDATAAG ITVGGAAGGG FTLSDALMSR LNAPSVVVGS NTHAGTITVA GALTSAGALT LQNEGVGAGA GGIVLNGAVT ADRLGLLSAG DITQTVKAPI TAQHLLARSS RGSVLLDRAA NNVSENTLGG GAAGAFRYQD VDGVRIGALS VTGFDAGSNQ PQLVSATSMA ADTVFVRTLS GDLTLDTAVT SSSGTDLVAA ARFQNAGGGS IGGAPWRIWA DTWVGESRGG LAGSGATPNL FHCAYLGLCT VTITPGDNHF IYAQQPRATV VIGDASRPFG TANPPFGFTI GGLILGDGTA GFLGTPTSAA GIFSPAGRYG INGSFTSAAG YAVDVVPGTL TVTASLRRPD FPGSDLVREL PNTNTYTFDR NLGAPPICFA TGPLEGDRAQ QDGDLLAREW SRVRSRPNLT SCVATDRKNG CADF
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