Gene Vapar_0492 details

Gene Information

• Locus tag: Vapar_0492
• ID: 7972902
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 532633
• End bp: 534603
• Gene Length: 1971 bp
• Protein Length: 656 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791095
• Product: putative site-specific recombinase transmembrane protein
• Protein accession: YP_002942421
• Protein GI: 239813511
• COG category: [L] Replication, recombination and repair
• COG ID: [COG4389] Site-specific recombinase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGCTG CATCGCTTGA CCTGCAGGGG CTGCTGGCCC GGCTTGATCC GACGGCGGAT 
GTGGCGCAGC GCCACATCTG GCTGATCGAC GTCTTCGACT GGCTGCGCGG CGACCGTGCG 
TCGCCGCAGG CGGCGGTGGG GCGGATGTCG CTGCTGCTCG ACGCGGTCGA GGCGCGGCCC 
GAGCTGCGCG GGCGGCTGCG GGCATGGTGG CGCGCCTTCA CGCAGGCGGT CGACCTGACC 
ACGCTGCTCG CGGACTACGG CTTTGCGCCG CGCACCGCCT TCGTGAGCGA GCTCACCGAA 
CGGCTGCGCC GCAAGATCCT GCCCGGCACG CCCGAAACCA CCGACGCCTC GGACCTGTTC 
CGCATGGTGC TGCCCGGCGC GTTCGATGCG GGCTGGATCG CATTGCTCGA CGACGCACAG 
CTCGCGCGCA TCGGCAATCT GCTGGCCGAC GCCGCACTCG ACGACGATGG CGCCCCGCGC 
GGGCGCCACA CCGTGATGGA CGCCGTCACC TACTGCAGCA GCCAGGTGGT GGCGGCCGGC 
TTCTCGCCCG AATTGCGGCT GCGCATGAGC GCCGCGAGCG AGAGCCGCGC CTTCCATGCG 
CTGATGTCCG ATCTCGACGC GTTGCGCGAG CAGATGTTCC GGGCCCCCCG CAATGAAGAC 
GCGTTGCAGG CCGCGTTCCT GGCCTTCCGC GACCGGCTCG ACGCCTGCCG CGCCAGCGCC 
TCCTCGGTCT ACACGCACCT GGAGGACAAC GGCATCTCGG TCGGCCTGGT GTTCCGGCTG 
CGCCAGCTGC GCGAGCGGGT GCTGCGCATC CGCGAACTGC TCGACTGCCT GATCTCGCCC 
GCACCCGCCC CCAGCGTGGC GCGGCTGGTG GGCCGGCTGG TGCTGGCCGG CGGCGAGCGC 
AACAGCATCC GCGCGCTGAT CGCGTCGAAC TCCTCGATGC TCGCGGCCAA GGTGACCGAG 
CGCAGCGCCG AGACCGGCGA GCACTACATC ACGCGCGACC GCGCCAGCTA CCTGCAGATG 
GTGCGCAAGG CCGCGGGCGG CGGCGCGCTC ACCGCGCTGA CGGTGCTGCT CAAGTTCGGC 
ATCTATTCGC TCGCGCTGTC GGCCTTCTGG AGCGGGCTCT GGTCGGGACT GATGTATGCC 
GCCAGCTTTG TCGCGATCCA GCTGCTGCAC CTGACGCTGG CCACCAAGCA GCCCGCGATG 
ACGGCGCCGG CCATGGCGGC GCGGCTGCGC GACATCAAGA CCGATGCCGC GGTGGCCGAT 
TTCGTCGACG AAGTGGCCAA TCTGGTGCGT TCGCAGGTGG CGGCCGTGCT GGGCAACGTG 
GGCCTGGTGG TGCCCGCGAT GCTGGCGCTC GCCCTGCTGG TGCAGTTCGC GCTCGGCCGG 
CCGCTGCTGG ACGCGGCGCA TGCCGCGGCC ACGCTGCAAT CGCTCTCGCT GGCGGGCCCG 
ACCGCGCTCT TCGCGGCCTT GACCGGCGTG CTGCTGTTCG CGGCCAGCAT CGTCGCGGGC 
TGGACAGAAA ACGCCTTTGT CCTGCATCGC CTGGACTCCG CCATGCGTTA CAACCCTCGC 
ATCGGCGCTT TTCTGGGTGC CGCCCGCGCC CGCCGCTGGG CCACCTTCAT GCGCACGCAC 
ATATCGGGCT TTGCCTCCAA CATCTCGCTC GGGCTCATGC TCGGACTGCT GCCCGCATTC 
GCGGGTTTCT TCGGGCTCGG GCTGGACGTG CGCCACGTGA CACTGTCGGC CGGGCAGATC 
GCGGCGGCCG CGGCCTCCAC GGGCATGGCG GTGCTCCAGC AGCCCGCGCT GTGGTGGGCG 
GTGGCGGCTA TTCCCGTGAT CGGCGCGCTC AATGTGAGCG TGAGTTTCTA TTTCGCGTTC 
CGGCTGGCGC TGCGCGCGCA CAGCGTCAGC CTGGGTGACC GCGCACGCAT CCGCAGCGCC 
ATCTGGGCGC GCTGGCGCAG CCGGCCCATC AGCTTTTTTC TACCTGCATG A 

 

Protein sequence

MAAASLDLQG LLARLDPTAD VAQRHIWLID VFDWLRGDRA SPQAAVGRMS LLLDAVEARP 
ELRGRLRAWW RAFTQAVDLT TLLADYGFAP RTAFVSELTE RLRRKILPGT PETTDASDLF 
RMVLPGAFDA GWIALLDDAQ LARIGNLLAD AALDDDGAPR GRHTVMDAVT YCSSQVVAAG 
FSPELRLRMS AASESRAFHA LMSDLDALRE QMFRAPRNED ALQAAFLAFR DRLDACRASA 
SSVYTHLEDN GISVGLVFRL RQLRERVLRI RELLDCLISP APAPSVARLV GRLVLAGGER 
NSIRALIASN SSMLAAKVTE RSAETGEHYI TRDRASYLQM VRKAAGGGAL TALTVLLKFG 
IYSLALSAFW SGLWSGLMYA ASFVAIQLLH LTLATKQPAM TAPAMAARLR DIKTDAAVAD 
FVDEVANLVR SQVAAVLGNV GLVVPAMLAL ALLVQFALGR PLLDAAHAAA TLQSLSLAGP 
TALFAALTGV LLFAASIVAG WTENAFVLHR LDSAMRYNPR IGAFLGAARA RRWATFMRTH 
ISGFASNISL GLMLGLLPAF AGFFGLGLDV RHVTLSAGQI AAAAASTGMA VLQQPALWWA 
VAAIPVIGAL NVSVSFYFAF RLALRAHSVS LGDRARIRSA IWARWRSRPI SFFLPA