Gene Vapar_0459 details

Gene Information

• Locus tag: Vapar_0459
• ID: 7970200
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 500710
• End bp: 502755
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791062
• Product: integral membrane protein-like protein
• Protein accession: YP_002942388
• Protein GI: 239813478
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0421] Spermidine synthase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACGCG CCGGCATCCA GCTCCTGTTT GCCGGCACCA TCTTCAGCAG CGCGTTCCTG 
CTGTTCCTGG TGCAGCCGCT GATCGCCAAG CAGATCCTGC CCTGGTTCGG CGGCTCGGCC 
GCCGTCTGGT CGACCTGCAT GGTGTTCTTC CAGGCCGTGC TGCTCGCGGG CTATGCGTAT 
TCCGACTGGG TCACGCGCCG CCTTCGCGTG CGCGCGCAGG CCGCGCTTCA CGTGGGGCTG 
CTGCTGGCGA GCCTGGCCTT CCTTCCGCTG GTGGTGGCCG CGCGCTGGAA GCCCACCGGC 
GCCGAAGACC CGGCGTGGCT GATCCTGGGG CTGCTGCTCG CGACCATCGG CCTTCCGTAC 
TTTCTTCTGT CGACCACCGG GCCGCTGGTG CAGTCGTGGG TGGCGCGCAC GCCCTGGAGC 
GCGCGGGTGT ACCGCTACTT CTCGCTCTCC AACCTGGCGT CGCTGCTGTC GCTGCTGAGC 
TACCCGGTGC TGATCGAGCC GCGCAGCTCG CTGCTGCAGC AGGCGCTCGG CTGGTCGTGG 
GGCTACGGTC TGTTCGCGCT GCTGTGCGCC GGCACGACAT TGCTGGTGGC GTACCGCTGG 
CCTGCGGCTG TGCCGGTTGG CGCGGCGCCC GGCCAGGCCG CGGCCGCCGC CGATAGCGAA 
AAACCGCCGC GCTGGTCCGA CGGCCTGCTC TGGCTCGTGC TGCCGGCGCT GGCGTCGTGG 
CTGTTGTTGG CCGTGACCAA CCACATCACC CAGAACGTCG CGGCGGTTCC CTTTCTCTGG 
ATCGTGCCGC TGTCGCTGTA CCTGTTCACC TTCGTGCTGT GCTTCGAGAG CGACCGCTGG 
TACCGGCGCG GCGCCTTCCT GCCGCTGGCG GCGGGCGTGC TGCTGCTGTG CGCCTTCGGG 
CTGCAGCACC ACATCGGCTC GGACGTGCGC ACGGGGCTGC CGATCTATGT CGGCGGCCTG 
TTCGTGCTGT GCATGTTCCT GCACGGCGAA ACCGCCGGGC TGCGGCCGGC GCCGCGCTAT 
CTCACGCGCT TCTACCTGAT GCTCGCGCTC GGCGGCGCGC TGGGCGGCGC CACGGTCGGG 
TTGGTGGCGC CGCATGTGCT GCCGGCCTAC TACGAGCTGG GCATCGGCCT GGTGCTGACG 
GCGCTCGCGG CGGCGGCCGT CCTGCGCCGC CGGAACTGGC TGCGGGCCAT GAGCGTGGCA 
TTGGCGGCCG GCTGCGCATA CTTCCTGATG GCGCAGATCG CGAGCGACCG GTCGGACGCG 
CGCCACCTGC TGCGCAATTT CCATGGCGCG CTGATCACCT TCGACATGCG GCGCCTCCAT 
CCCTCGGACA GCGTGCGGGT GCTGTCGCAC GGCTCCATCA AGCACGGCGA GCAGTTCCTG 
GACCCGGCCC GCCGGCGCGA GCCCACCACC TACTACGGCG CCACCTCCGG CATCGGCCGC 
GCGATGGCCG CCGCACCGGC CGGGCCGCGC CGCGTGGGGC TGATCGGCCT GGGCGCCGGC 
ACACTCGCGA GCTACGGCCG CAGCGGCGAC GCCTACCGCA TCTACGAGAT CAATCCGCAG 
GTGTTCGAGC TCGCGGACAG CGAATTCAGC TTCCTGCGCG ACAGCCCCGC GCGCATCGAG 
CGCGTGCTCG GCGATGCGCG GCTGGCGCTG GAGCGCGAGC CGCCGCAGGG CTTCGACCTG 
CTTGCGGTGG ATGCCTTCTC GGGCGATGCG GTGCCGGCCC ACCTGCTCAC GGCGCAGGCC 
ATGGATGTCT ACCTGCGGCA CATGAAGCCG GATGGCATCG TGGCCTTCCA TGTGACCAAC 
CGTTTCCTCG AGCTCGCGCC CGTGGTCGCG CGGATCGCCG AGCTGAAGGG CCTGCATGCC 
GTGCTCGTGA GCGATGACGC CGAGGCCTCG CGGTGGCTCA GCCCGACCGA CTGGGTGCTG 
GTGGCGCGCG ATCCCGCCGT GCTGGCACGC GAGCCGGTGC GCGCCGCGGC CTCGCCGATC 
GTGCTGCGCG CCGGTGTCCG CCCCTGGACC GACGATTTCA ACAACCTGCT GAGCGTGCTG 
AAGTAG 

 

Protein sequence

MERAGIQLLF AGTIFSSAFL LFLVQPLIAK QILPWFGGSA AVWSTCMVFF QAVLLAGYAY 
SDWVTRRLRV RAQAALHVGL LLASLAFLPL VVAARWKPTG AEDPAWLILG LLLATIGLPY 
FLLSTTGPLV QSWVARTPWS ARVYRYFSLS NLASLLSLLS YPVLIEPRSS LLQQALGWSW 
GYGLFALLCA GTTLLVAYRW PAAVPVGAAP GQAAAAADSE KPPRWSDGLL WLVLPALASW 
LLLAVTNHIT QNVAAVPFLW IVPLSLYLFT FVLCFESDRW YRRGAFLPLA AGVLLLCAFG 
LQHHIGSDVR TGLPIYVGGL FVLCMFLHGE TAGLRPAPRY LTRFYLMLAL GGALGGATVG 
LVAPHVLPAY YELGIGLVLT ALAAAAVLRR RNWLRAMSVA LAAGCAYFLM AQIASDRSDA 
RHLLRNFHGA LITFDMRRLH PSDSVRVLSH GSIKHGEQFL DPARRREPTT YYGATSGIGR 
AMAAAPAGPR RVGLIGLGAG TLASYGRSGD AYRIYEINPQ VFELADSEFS FLRDSPARIE 
RVLGDARLAL EREPPQGFDL LAVDAFSGDA VPAHLLTAQA MDVYLRHMKP DGIVAFHVTN 
RFLELAPVVA RIAELKGLHA VLVSDDAEAS RWLSPTDWVL VARDPAVLAR EPVRAAASPI 
VLRAGVRPWT DDFNNLLSVL K