| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0441 |
|---|
| Symbol | |
|---|
| ID | 7970182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 483363 |
|---|
| End bp | 483866 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644791044 |
|---|
| Product | Fimbrial protein pilin |
|---|
| Protein accession | YP_002942370 |
|---|
| Protein GI | 239813460 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTT CCATAACGCG CGCTGCGCAA AAGGGCTTTA CGCTAATCGA ATTGATGATC
GTTGTCGCGA TCATTGGTAT CTTGGCCGCT ATCGCGATTC CGCAATATCA GACTTACGTT
GCCAAATCGC AGTTCACCCG TGCAATGGGT GAAGCTGGCA GCCTGAAGAC GGCTGTTGAC
ACCTGCCTGC TCGACGGCAA GACCGTTGTG GGCACGGCTG CCGCTGAATG CAACCCCGCT
GCCAGCGCAT CGACCATTCT CGTCGGCGCT GCTCAAGCTG GCGCTCCTGC TGTGACCACG
GGTGTCAATG GTTACCCGCA AGTCTCGCTC GGCGCGACTG CTGCTGCTGC CTCCACAGTG
ATCGCTACGC TGGGCAACTC TGCAGCTCAG CCGCTGAAGA CGAAGACGAT CACTTGGTCG
CGCGCTGGTG ACTCCGGCAC CTGGACCTGC AGCACCAATG CTGACCAGAA GTACGTTCCG
ACGGGTTGCA CGGTTGTGCC GTAA
|
|---|
| Protein sequence | MKRSITRAAQ KGFTLIELMI VVAIIGILAA IAIPQYQTYV AKSQFTRAMG EAGSLKTAVD
TCLLDGKTVV GTAAAECNPA ASASTILVGA AQAGAPAVTT GVNGYPQVSL GATAAAASTV
IATLGNSAAQ PLKTKTITWS RAGDSGTWTC STNADQKYVP TGCTVVP
|
|---|
| |