| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0437 |
|---|
| Symbol | |
|---|
| ID | 7970178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 478510 |
|---|
| End bp | 480003 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791040 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_002942366 |
|---|
| Protein GI | 239813456 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.265933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CTCCCAAGCC CGAAGCCGCT TCGCCGGCCC CGCCCTCCAT CGGCACCCTG
CGCGAACGCT ACGGCCCGCG CTACCGCTGG TACCTGCTGC TCTCGGTGAT GGTGGGCGTG
ATGGCGTCGA TCATGTCCTC GACCATCGTC AACGTCGCAA TCCCGGGCAT GAGCCACCAT
TTCTCGCTGG GCCAGGAGCG CGCGCAGTGG GTGAGCTCGG GCTTCATGGT GGCGATGACG
GTCTCGATGC TGACCACGCC GTGGCTGCTG TCGCGCTACG GCTACCGGCG CACCTATGCG
GGCACGATGG TGCTGCTGCT CGCGGGCGGC GTGGCGGGCG GGCTGGCCAA CAACTTCTCG
CTGGTGCTGC TGGCGCGCGT GGCCGAAGGG CTTGCGGCGG GCGTGGTGCA GCCGATTCCG
GCCATCATCA TCCTGCGCGC CTTCGAGCCG CATGAGCAGG GGCGCGCGAG CGGCATCTTC
GGCATGGGCG TGGTGCTGGC GCCGGCCATC GGCCCGAGCA TCGGCGGCGT GCTGGTCGAC
CTGTTCGGCT GGCGCTCGAT TTTCTTCATG GTGGTGCCGT TCTGCCTGGC CTCGCTCTGG
CTGGCCTACC GGTTCGTGCC CACCACGGCG CCCGGCGGCG TGGCGGCCAC GCGCGGCAGC
GGGCTCGACT GGCGCGGCCT CGCGCTGGGC ACCGTGGGCA CGCTCTGCCT GCTGAACGGC
CTGGTCGAGC TGCGCGGCGA TTCGCCGCTG CAGGCCGGCC TGCTGCTGGC GGCCGCGGCG
CTGGCCTTTG CAGCCTTCGT CTGGTGGCAG CGCCGCCATG CGGCCGGCGG CGGCGAACCG
CTGATGAACC TGGCGCTCTT CCAGTACCGC CAGTTCGCCA TGGGCAGCGT GGTCGCCTTC
ATCTACGGCA CGGCGCTGTT CGGCTCCACC TACCTGCTGC CGGTGTACAT GCAGGTCGGG
CTGCAATTGT CCGCGTCGCA CGTGGGCACC ATCCTGCTGC CGGCGGGCAT CGTGCTGGCC
CTGACCATTG CGGGCGTGGG CCGGCTGGCC GACCGGCAGC CGACCTGGAT GCTGGTGAGC
ATCGGCCTGG TGCTGCTGGC GGCTTCGTTC GCGCTGATGG TGGTGCTCCG GCTCGACAGC
GCGCTCTGGC TGCTGGTGGC TTTTGCGATC ATCGGGCGCA TCGGGCTTGG CTTCATCCTG
CCCTCGCTCA ACCTCGGCTC GATGCGGCCG CTGGCCAAGC CGCTGATTCC ACAGGGCGCC
AGCGCGATCA ACTTCCTGCG CATGCTGGGC GGCGCGGCCG GCGTGAGCCT GTGCGCCATC
GTGCTCGAGT GGCGGCTGGC GGCGCATGGC GATTCGCTGG CCAACGCCGC GAGCAGCCCC
GCGCGGCTGG CCGCCTTCGA CGAGGTGTTC CTGATGCTGG CGGCGCTCTG CGCACTGGCC
ATTTGCGCGG CCTGGCAGCT TCGGCAGTCC GATCCGGCAA GGGTAAGCAC TTAG
|
|---|
| Protein sequence | MTTTPKPEAA SPAPPSIGTL RERYGPRYRW YLLLSVMVGV MASIMSSTIV NVAIPGMSHH
FSLGQERAQW VSSGFMVAMT VSMLTTPWLL SRYGYRRTYA GTMVLLLAGG VAGGLANNFS
LVLLARVAEG LAAGVVQPIP AIIILRAFEP HEQGRASGIF GMGVVLAPAI GPSIGGVLVD
LFGWRSIFFM VVPFCLASLW LAYRFVPTTA PGGVAATRGS GLDWRGLALG TVGTLCLLNG
LVELRGDSPL QAGLLLAAAA LAFAAFVWWQ RRHAAGGGEP LMNLALFQYR QFAMGSVVAF
IYGTALFGST YLLPVYMQVG LQLSASHVGT ILLPAGIVLA LTIAGVGRLA DRQPTWMLVS
IGLVLLAASF ALMVVLRLDS ALWLLVAFAI IGRIGLGFIL PSLNLGSMRP LAKPLIPQGA
SAINFLRMLG GAAGVSLCAI VLEWRLAAHG DSLANAASSP ARLAAFDEVF LMLAALCALA
ICAAWQLRQS DPARVST
|
|---|
| |