| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0431 |
|---|
| Symbol | |
|---|
| ID | 7970172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 470609 |
|---|
| End bp | 471874 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644791034 |
|---|
| Product | benzoate transporter |
|---|
| Protein accession | YP_002942360 |
|---|
| Protein GI | 239813450 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3135] Uncharacterized protein involved in benzoate metabolism |
|---|
| TIGRFAM ID | [TIGR00843] benzoate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.586868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTTT TCAAGGATCT GAGCCTCTCG GCCTTCACTG CGGGCTTCGT CGCGGTGCTC
GTGGGCTTCA TGAGCTCGGT GGCCATCGTG TTCCAGGCCG CGCAGGCCTT CGGCGCCACG
CCCGAGCTTG CGGCCTCGTG GATGTGGGCG CTGGGCATCG GCATGGGCCT GCCGTCCATC
CTGCTGTCGC TGTGGTGGCG CAAGCCGGTG ATGATCGCCT GGAGCACGCC GGGCGCCGCG
GTGCTCGCCG TGGCGGCCGG CAGCTATGGC ATGGGCGAGG CGGTCGGCGC CTTCATCGCC
TGCGCGCTGC TGGTCGTGCT GGCGGGCGCC ACGGGATGGT TCGAGCGCGT GATGAACCGG
ATCCCGATGG CCATTGCCGC CGCGCTGCTG GCCGGGGTGC TCGCGCGCTT CGGGCTCGAC
GCCTTCATCG CCGCGAGAAC CGCGCTGCCG CTGGTGCTGC TGATGCTCGG CACCTACCTG
GTGGCCAGGC GCCTGCTGCC GCGCTATGCG GTGCCGCTCA CGCTGCTGGC GGCCGTTGCC
TTTGCGGCCG CGCGCGGCGA GATGAGCGTG TCCGCGGTGC AGTTCTCGCT CACCTGGCCG
GTGTTCACCA TGCCGGTGTT CAGCTGGCAG GCCATCGTGA GCCTGGCGCT GCCGCTCTTC
ATCGTCACCA TGGCCTCGCA GAACCTGCCG GGCGTGGCGA CCATCCGCGC CGCAGGCTAC
GGCGACCTGC CGATCAGCAA GATCATCACG GCAACCGGCT TCGCCACGCT GGTGCTCGCG
CCCTTCGGTG CCTTTGCCCT GAACCTGGGC GCGATCACCG CCGCCATCTG CATGGGCCGC
GAGGCGCACG AAGACCCGGC GCGCCGATAC ACGGCCGCGG TGAGCTGCGG CGCGCTCTAC
GTGGTGATCG CCTTCTTCGG CGCCGCGGTC ACCGGGCTGC TCACGGCCTT TCCGAAGGAG
CTGGTCGCCG CCATTGCCGG CCTGGCGCTG CTGGGCACCA TCGGCAGCGG GCTGGCCGCC
GCGGTGCGCG ACGAGCCGCA CCGCGAGGCC GCGGTCATCA CCTTCCTGGT GACGCTCTCG
GGCGTGGCCA TCGCGGGCAT CGGCTCGGCC TTCTGGGGCG TGGTGGCGGG CGCGCTCGCA
CTCGCGGTGC AGCAGGCCGG GCGCACAAAG GCCTCCGCCG GCAAGGGCAT CGCCGCTTCC
GGCAACATCG CGCCAGACAG CAGCAACATG GCGGCCACAC CCGGCGCCGG AAAGACTCCC
AGATGA
|
|---|
| Protein sequence | MRFFKDLSLS AFTAGFVAVL VGFMSSVAIV FQAAQAFGAT PELAASWMWA LGIGMGLPSI
LLSLWWRKPV MIAWSTPGAA VLAVAAGSYG MGEAVGAFIA CALLVVLAGA TGWFERVMNR
IPMAIAAALL AGVLARFGLD AFIAARTALP LVLLMLGTYL VARRLLPRYA VPLTLLAAVA
FAAARGEMSV SAVQFSLTWP VFTMPVFSWQ AIVSLALPLF IVTMASQNLP GVATIRAAGY
GDLPISKIIT ATGFATLVLA PFGAFALNLG AITAAICMGR EAHEDPARRY TAAVSCGALY
VVIAFFGAAV TGLLTAFPKE LVAAIAGLAL LGTIGSGLAA AVRDEPHREA AVITFLVTLS
GVAIAGIGSA FWGVVAGALA LAVQQAGRTK ASAGKGIAAS GNIAPDSSNM AATPGAGKTP
R
|
|---|
| |