| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0424 |
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| Symbol | holA |
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| ID | 7970165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 462199 |
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| End bp | 463284 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644791027 |
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| Product | DNA polymerase III subunit delta |
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| Protein accession | YP_002942353 |
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| Protein GI | 239813443 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1466] DNA polymerase III, delta subunit |
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| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.813345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCTTG CCAGTGCCCA GCTGGGCTCC CATCTGCAGA AGGGGCTGAA GTCCCTCTAC
GCGATCCATG GCGACGAGCC GCTGCTCGCG CAGGAGGCGG CCGATGCCAT CCGCACCGCG
GCGCGCGCGG CGGGCTATAC GGAGCGCAGC TCCTACACCG TGGCCGGTGC GCACTTCGAC
TGGAGCGCGG TGCTGGCGGC GGGCGGTTCG CTCTCGCTGT TCGCCGACAA GCAGATCGTC
GAGATCCGCA TTCCCTCGGG CAAGCCCGGC AAGGACGGCA GCATCGCGCT GCAGCAGCTG
GCCGAGTCCG CGCAGGGCAA CGACAGCACG CTCACGCTGG TGATGCTGCC GCGGCTGGAC
AAGGCCACGC GCACCGGCGC GTGGTTCTCG GCGCTCGAGA ACAACGGCGT GAGCCTGCAG
GTCGACCCGA TCGAGCGCAA CGCGCTGCCG CAGTGGATCG CGCAGCGCCT GGGCCTGCAG
GGCCAACGCG TGATGCCCGG CGACGAAGGC CAGCGCACGC TGCAGTTCTT TGCCGACCGC
GTGGAAGGCA ACCTGCTGGC CGCCCACCAG GAGATCCAGA AGCTCGCCCT GCTGCATCCG
GCCGGCGAGC TGAGCTGGGA GCAGGTCGAG GGCGCGGTCA ACAACGTGGC GCGCTACGAC
GTCTTCAAGC TCTCCGAGGC CGTGCTGGCC GGCAACCCGC AGCGCGTGGC GCGCATGCTC
GACGGCCTGC AGGCCGAAGG CGAGGCCGAG GTGCTGGTGC ACTACACGAT CGCCGAGGAC
ATCCGCGCGC TCAAGCGCGT GAAGGACGCC ATGGCCGCGG GCCGGCCGCT GCCGATGGCG
CTGCGCGAGA ACCGCATCTG GGGCCCGCGC GAGCGCGCCT TCGAGCGCGT GCTGCCCCGG
CTGGACGACC GCATGCTGGC CCGCCTGCTG CGCGCGGCCC ATGTGGTGGA CGGCATCTGC
AAGGGGCTCA AGCAGCCCGA CTGGCCCGCC GGCGGCTGGC AGGCGCTGCA GCGGCTGGCG
CTGATGCTGT GCCGCGCCTG CAGCACCGGT CCCGCTCCCT CTCCCTCCGG GAGAGGGTTG
GGATGA
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| Protein sequence | MQLASAQLGS HLQKGLKSLY AIHGDEPLLA QEAADAIRTA ARAAGYTERS SYTVAGAHFD
WSAVLAAGGS LSLFADKQIV EIRIPSGKPG KDGSIALQQL AESAQGNDST LTLVMLPRLD
KATRTGAWFS ALENNGVSLQ VDPIERNALP QWIAQRLGLQ GQRVMPGDEG QRTLQFFADR
VEGNLLAAHQ EIQKLALLHP AGELSWEQVE GAVNNVARYD VFKLSEAVLA GNPQRVARML
DGLQAEGEAE VLVHYTIAED IRALKRVKDA MAAGRPLPMA LRENRIWGPR ERAFERVLPR
LDDRMLARLL RAAHVVDGIC KGLKQPDWPA GGWQALQRLA LMLCRACSTG PAPSPSGRGL
G
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