| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0417 |
|---|
| Symbol | |
|---|
| ID | 7970158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 454141 |
|---|
| End bp | 455616 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644791020 |
|---|
| Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | YP_002942346 |
|---|
| Protein GI | 239813436 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2072] Predicted flavoprotein involved in K+ transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCG ACGCCGCTTC CCCCGCCCCA TCCCTCCACC CGCAAGGCCT TGCCGCGCTC
GAGCAGCGGC TTGCCCGGGA TCTCGAATGC CTCGGCTGGC CCGCGCGCGC CTGGATGCCG
GCTCGCACGC ACGGCGGCGA GCCCGTGCTG GACGTGGCCA TCATCGGTGC CGGCCAGGCC
GGGCTCGCGG CCGCGGCCGC GCTGGCCCAG CAGGGCATCC GGGCCGTCGT GTTCGACCGC
TCGCCTGCGG GCAGCGAAGG GCCATGGGCC ACCACGGCGC GCATGGAAAC CCTGCGTTCG
CCCAAGGAAC TGACCGGCCC CGCGCTGGGG CTGCCCGCGC TGACCTTCCG CGCCTGGTTC
GAGGCCCAGT TCGGCAGCGA GGCCTGGGCT GCGATGGACA AGATCCCGCG CCTGCAGTGG
ATGGACTACC TGCGCTGGTA CCGCCGCGTG ATGAACATCG ATGTGCGCAA CGACATGGCC
GTCACCGGCA TCCAGCCGCT CGCCGATGGT GCGATGGTGC GGCTCGCGCT GCGCACGCCG
GCCGGTGCAC AGCAGGTGCT GGCGCGCCGC GTGGTGCTGG CCACGGGGCG CGACGGGCTT
GGCGGCCCCG CGGTTCCGGC GTTCGTCAAC GCGCTGCCGC GCTCGCAGTG GGCCCATTCG
TCCGACGAGA TGGACTACGG CCGGCTCGCC GGGCTGCGCG TGGGCGTGGT CGGCGCGGGC
TCGTCGGCCA TGGACAGCGC GGCCACCGCG CTGGAGGCCG GCGTGCACAG CGTCGAGCTC
CTGATCCGCC GGCCCGACCT GCCGCGCGTC AACAAGGGCA AGGGCGCCGG CGTGCCGGGC
CTGACGCAGG GCCACTACGA CCTGCCCGAC GCGTTCAAGT GGCGCATCCG CCACTACATC
AACGTCGCCA ACGTGCCGCC GCCGCATGGC AGCACGCTGC GCGTGTCGCG CCACCCGAAT
GCGTTCTTCA ATTTCGGCTG CCCGGTGCTT GCGGTCGAGC CGCAGGGCGC GGCAATGCGC
GTGGCCACGC CCCGGGGCGA CTTCGTGTTC GACTTCCTCG TTGTTTCGAC CGGTTTCAAG
ATCGACTGGC GCTGCCGCCC CGAGTTCGAC ACCATTGCAT CGCATGTGCG CACCTGGAAG
GACCGTTTCG TGCCCGCGCC CGGCGACGAA GACCAGGAGC TGGCCGATTC GCCCGATCTC
GGGCCGGCCT TCGAATTCCG CGAGCGCACA GCGGGCGAGT GCCCGGGCCT CGAGCGCATC
CATTGCTTCT GCTATCCCGC GGCCTTGTCG CACGGCACGG TGTCGGGCGA CATTCCCGCG
ATCAGCGATG GCGCCCGGCG GCTTGCGAGC GGCATGGCCA GCCTGTTCTA CCGCGAGGAC
TTCGAGCAGC ACTTCGCCAA CCTCGAGGCC TACAGCGAGC CCGAACTGTT CGGCGACGAA
TGGGTGCCCG CGCCGCCGCC GTCCGAACGC GGCTGA
|
|---|
| Protein sequence | MTTDAASPAP SLHPQGLAAL EQRLARDLEC LGWPARAWMP ARTHGGEPVL DVAIIGAGQA
GLAAAAALAQ QGIRAVVFDR SPAGSEGPWA TTARMETLRS PKELTGPALG LPALTFRAWF
EAQFGSEAWA AMDKIPRLQW MDYLRWYRRV MNIDVRNDMA VTGIQPLADG AMVRLALRTP
AGAQQVLARR VVLATGRDGL GGPAVPAFVN ALPRSQWAHS SDEMDYGRLA GLRVGVVGAG
SSAMDSAATA LEAGVHSVEL LIRRPDLPRV NKGKGAGVPG LTQGHYDLPD AFKWRIRHYI
NVANVPPPHG STLRVSRHPN AFFNFGCPVL AVEPQGAAMR VATPRGDFVF DFLVVSTGFK
IDWRCRPEFD TIASHVRTWK DRFVPAPGDE DQELADSPDL GPAFEFRERT AGECPGLERI
HCFCYPAALS HGTVSGDIPA ISDGARRLAS GMASLFYRED FEQHFANLEA YSEPELFGDE
WVPAPPPSER G
|
|---|
| |