| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0414 |
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| Symbol | |
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| ID | 7970155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 448060 |
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| End bp | 450141 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644791017 |
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| Product | glycogen debranching enzyme GlgX |
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| Protein accession | YP_002942343 |
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| Protein GI | 239813433 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAGCC CGGGCTCCCC CTTCCCCCTT GGCGCGACGC TCTCGCCGAA CGGCGTGAAC
TTCGCGCTCG CGGCGCCCAG CGCCGAAGCC GTCGAGCTCT GCCTTTTCGA CGGCACGGGC
CAGCACGAGC AGCAGCGCAT CCGGCTGCCG GCCTTCACCG ACGGCGTCTG GCACGGGCTG
CTGCCGAGCG GTCGCGCCGG GCTGGTCTAC GGCTTTCGCG TGCACGGGCC ATGGGCGCCG
CACGCGGGAC AGCGCTTCAA TCCCGCGAGG CTGCTGCTCG ACCCGTATGC GCGCGAGATC
GTCGGCAGGT ACGACGGCAG CGAGCTGTTC CTCGGACACG ATCCCGCGAA TCCGGACCAG
CGCAACACGC GCGACAACGG CGCCGTGGCG CTCAAGGGCC GCGTGGCGGC CGCCGCCGAT
GGCTCGGCCG CACCGGGCCA TGCCCGCATC CCGGCCGGCG AGCGCGTGCT CTACGAACTG
CATGTGCGCG GCCAGACCCG GCTGCACCCG GGCGTGCCCG CGGCCTTGCG CGGCACCTAT
GCCGGCCTGG CCGAGCCCGT GGTGCTCGAC CACCTGCAGG CCCTGGGCGT CACCACGCTG
AGCCTGATGC CGGTGCAGCA CCGCGCCGAC GAACAGCGGC TGCTCGCCAT GGGCCTCGGC
AACTACTGGG GCTACAACAC CATCGGCTGG TTCGCGCCCG AGGCGCGCTA CTGGAGCGGC
CGCGCCGGCA CCACGCCGGC CAGCGAATTC CGCGCCCTGG CCGACGCGGT GCATGCGCGC
GGCATGGAGC TGGTGATCGA CGTGGTCTAC AACCACAGCG CCGAGAGCGA CGAGCTCGGT
CCCACGCTGT CGATGCGCGG CATCGACAAC GCGCTCTACT ACCACCTGCG CGCCGATGAC
CGTGCGCTCT ACACCAACTG GGCCGGCACC GGCAACTGCC TCGACCTGGC CGAGCCGCGC
GTGCTGCAGC TCGTGATGGA CAGCCTGCGC CACTGGACCT GCGCGCTCGG CGTCGACGGC
TTCCGCTTCG ACCTCGCGCC GGTGCTGGGG CGCGGCGCCG ACGGCCATTT CGACCCGCGC
GCGCCCTTCT TCGCGGCCAT TGCGCAAGAC CCCGTGCTCT CGCGCACGCT GCTGATCGCA
GAGCCCTGGG ACATCGGGCC GGGCGGCTAC CGCCTGGGCG AATTCCCGCC GGGCTGGCTC
GAATGGAACG ACCGCTACCG CGATACCCAG CGCGGCTTCT GGCTGCGGCA GGGGCGCGAG
GGGGCCGCCG GCCTGGGCGA CTTCGCGCAT CGCTTCACGG CCTCGAGCGC GCAGTTCGCC
CACCATGGCC GCGCGCCCAC CGCCAGCGTC AACTTCATCA CCGCGCACGA CGGCTTCACG
CTGCGCGACC TGCTCTGCTA CGAAGAGCGG CACAACCTGG CCAACGGCGA GAACAACCGC
GACGGCCATG CGCACAACCT GAGCAACAAC TGCGGCGTCG AGGGCCCGAG CGACGACCCG
GCCGTGCAGG CCGAGCGCGG CCGCCTGCAG CGCGCGCTGC TCGCCGCGCT GCTGCTGTCG
CAGGGCACGC CGATGCTGCT GGCCGGCGAC GAGCTCGGCC ACAGCCAGCA AGGCAACAAC
AACGCCTACT GCCAGGACAA TGAAACCACC TGGCTCGCCT GGATCGGCGC CCACGATCCC
GCCAGCGAAG CAGCGCGGCT GAGCGCCTTC GTCGCCCGGC TCATTGCCCT GCGCCGCGAA
GCGCCCGTGC TGCGCAGCAC GCGCTGGTGG CCGGCCGAGC CGGCAGAGGG CGCGCCGGGC
ATCCGCTGGC TGCGGCCCGA CGGCCAGCCG ATGCGCGAGG CCGACTGGCA CGGCGGCACG
GCGCTTGCAA TCCTTTTCGA AGCGGCGGCC GCGGATGCGG GCGCCTGGCT GGTGCTGGTG
AATGCGGGGC CGGCGGCCAT GCCGTTCAGG CTGCCGGCGG GTTCATGGAA GTGGCGGCTC
GCGACCGACG ATCCGGCGCC CGAGGCCGGC GCCGCGCAGC CACAGCCGCA TGCCGGCACG
GTGGAGGTAC CGCGTTCGAG CCTCCGGATT GCAAGAACGT AG
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| Protein sequence | MLSPGSPFPL GATLSPNGVN FALAAPSAEA VELCLFDGTG QHEQQRIRLP AFTDGVWHGL
LPSGRAGLVY GFRVHGPWAP HAGQRFNPAR LLLDPYAREI VGRYDGSELF LGHDPANPDQ
RNTRDNGAVA LKGRVAAAAD GSAAPGHARI PAGERVLYEL HVRGQTRLHP GVPAALRGTY
AGLAEPVVLD HLQALGVTTL SLMPVQHRAD EQRLLAMGLG NYWGYNTIGW FAPEARYWSG
RAGTTPASEF RALADAVHAR GMELVIDVVY NHSAESDELG PTLSMRGIDN ALYYHLRADD
RALYTNWAGT GNCLDLAEPR VLQLVMDSLR HWTCALGVDG FRFDLAPVLG RGADGHFDPR
APFFAAIAQD PVLSRTLLIA EPWDIGPGGY RLGEFPPGWL EWNDRYRDTQ RGFWLRQGRE
GAAGLGDFAH RFTASSAQFA HHGRAPTASV NFITAHDGFT LRDLLCYEER HNLANGENNR
DGHAHNLSNN CGVEGPSDDP AVQAERGRLQ RALLAALLLS QGTPMLLAGD ELGHSQQGNN
NAYCQDNETT WLAWIGAHDP ASEAARLSAF VARLIALRRE APVLRSTRWW PAEPAEGAPG
IRWLRPDGQP MREADWHGGT ALAILFEAAA ADAGAWLVLV NAGPAAMPFR LPAGSWKWRL
ATDDPAPEAG AAQPQPHAGT VEVPRSSLRI ART
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