Gene Vapar_0398 details

Gene Information

• Locus tag: Vapar_0398
• Symbol: dppF
• ID: 7973542
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 430066
• End bp: 431112
• Gene Length: 1047 bp
• Protein Length: 348 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644791001
• Product: dipeptide transporter ATP-binding subunit
• Protein accession: YP_002942327
• Protein GI: 239813417
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4608] ABC-type oligopeptide transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGGCG ATGCCATCGG CGACGTCGTC GTGGAGGCGC GCAACCTGCA GCGCACCTAT 
GCCGTGCGGC GCGGCATGTT CCGCGCGCCT GCGCAGTTGC GCGCGGTCGG CGACATTTCT 
TTTCGCATCG AGCGCGGCCG CACGCTCGCG GTGGTCGGCG AATCGGGCTG CGGCAAGTCG 
ACGCTCGCGC GCATGGTCGC GTTGATCGAA AAGCCCACGG CCGGGCAGCT CGTGCTGGCC 
GGCCACGATG CGGTGGACCC GCCGCCCGCA TACCGGCGCG AACTGCGCCA GGCCGTGCAG 
CTGGTGTTCC AGAACCCCTA TGGCTCGCTC AATCCGCGCA AGAAGATCTC TGCGGTGCTC 
GAGGATCCGC TGGCCATCAA CACCGCGCTC GGCAAGCCCG AGCGGGTTGC CAAGGCGCGC 
GAGATGCTGG CGCGCGTGGG CCTGCGGCCC GAGCATGCGA ACCGCTATCC GCACATGTTC 
TCGGGCGGCC AGCGCCAGCG CATCGCCATT GCGCGCGCGC TCATGCTGGA GCCGCGCCTG 
CTGGTGGCCG ACGAGCCGGT GTCGGCGCTC GACGTGTCGA TCCAGGCGCA GGTGCTGAAC 
CTGCTGGCCG ACCTGCAGGC CGAGCTGGGC CTGGCCTATC TCTTCATCTC GCACGACCTG 
GGCGTGGTGC GGCACATCGC GCACGAGGTG CTCGTGATGT ACCTCGGCCA TGCGGTGGAG 
CAGGGCCCCA AGGCGCGCAT CTTCGCGCGG CCGCTGCATC CCTACACGCA GGCGCTGCTG 
GCATCCACGC CCGGCCTCAG CAGCCAGCGC ATCGTGCTCA AGGGCGAGCT GCCGTCGCCG 
CTCGATCCGC CCACGGGCTG CGTCTTCAAC ACGCGCTGCC CGCACGCGAC GCAGCGCTGC 
CGCGAGGAGC GGCCCCTGCT GCGCGCACTC GACGAGCGCC TGGTGGCCTG CCACTACGCG 
GAGAAATTCC TCGATGGCAC GCCGCCGGTC AGCGCCGATG TGCCTTTGTC CCCGCCGTTC 
GCCGCGCCTC TGGCGGCGAA CCCCTAG 

 

Protein sequence

MSGDAIGDVV VEARNLQRTY AVRRGMFRAP AQLRAVGDIS FRIERGRTLA VVGESGCGKS 
TLARMVALIE KPTAGQLVLA GHDAVDPPPA YRRELRQAVQ LVFQNPYGSL NPRKKISAVL 
EDPLAINTAL GKPERVAKAR EMLARVGLRP EHANRYPHMF SGGQRQRIAI ARALMLEPRL 
LVADEPVSAL DVSIQAQVLN LLADLQAELG LAYLFISHDL GVVRHIAHEV LVMYLGHAVE 
QGPKARIFAR PLHPYTQALL ASTPGLSSQR IVLKGELPSP LDPPTGCVFN TRCPHATQRC 
REERPLLRAL DERLVACHYA EKFLDGTPPV SADVPLSPPF AAPLAANP