Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0308 |
Symbol | |
ID | 7972657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 329246 |
End bp | 330316 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644790911 |
Product | ABC transporter related |
Protein accession | YP_002942237 |
Protein GI | 239813327 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTTCC TACGGCTCAC CGACCTGACC AAGTTCTACG GCGCCACGCG CGCCGTGTCG GCCATGAACC TCACGGTGGA GAAGGGCGAG TTCGTCTCGC TGCTCGGCCC CTCGGGCTGC GGCAAGACCA CGACGCTGCA GATGATCGCG GGCTTCGAGC CGGTGTCGAG CGGGCGCATC GAGCTCGCGG GCAAGGACAT CACGCATGCC AAGGCCAACA CGCGCGGCCT GGGCATCGTG TTCCAGACCT ACGCGCTGTT CCCGCACATG ACGGTGGCCG ACAACGTGAG CTTCGGCCTC GAGATGCGCA AGATGCCCAA GGCCGAGCGC GCGGAACGCG TGAAGCAGGC GCTCGCGCTG GTGCACCTGG AAGCGCACGC CGCGCGCTAC CCGCGCGAGC TCTCGGGCGG CCAGCGCCAG CGGGTGGCAC TGGCCCGCGC GCTCGTGATC GAGCCGCCGG TGCTGCTGCT GGACGAGCCG CTTTCCAACC TCGACGCCAA GCTGCGCGAG GAAATGCAGT TCGAGCTGCG CCAGATCCAG CGCAAGGTCG GCACCACCAC GGTGATGGTC ACGCACGACC AGAGCGAAGC CATGTCGATC AGCGACCGCG TGGTGGTGAT GGAAGGCGGC TGCGCCACGC AGATCGACCA TCCGCACCGC GTCTACGAGC ATCCGAGCAC GCGCTTCATC TCCACCTTCG TGGGCAAGGC CAACCTGCTG GACGGGCGCG TCACGGCCAG CGGCGCGCGC AGCTGCCAGG TGGCGGTGGG CGCGCTCGCG GTGGAAGTCG ACGACAGCGG CTACAAGCCG GGCGATGCGG TGCTGATGAG CGTGCGCCCC GAAAAGCTGC AGCTGGTGGA GGCCGGCCGC GGCCGCCTCG ACGGCCAGGT GCTGGAGCGC TTCTTCCTCG GCAGCCAGTG GCTCTATCGC CTGGGCACGC CCGCCGGCGA CCTGATGGTG CTGAGCCCCA ACGACGGCCG CGACGCGCTC GACGAAGGCC ATGCCGCCGG CATCGACTGG CCCGCGCATT GCACGCGCCT GCTGCCGGCC GGCGAGGCGG TGGCCGCATG A
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Protein sequence | MSFLRLTDLT KFYGATRAVS AMNLTVEKGE FVSLLGPSGC GKTTTLQMIA GFEPVSSGRI ELAGKDITHA KANTRGLGIV FQTYALFPHM TVADNVSFGL EMRKMPKAER AERVKQALAL VHLEAHAARY PRELSGGQRQ RVALARALVI EPPVLLLDEP LSNLDAKLRE EMQFELRQIQ RKVGTTTVMV THDQSEAMSI SDRVVVMEGG CATQIDHPHR VYEHPSTRFI STFVGKANLL DGRVTASGAR SCQVAVGALA VEVDDSGYKP GDAVLMSVRP EKLQLVEAGR GRLDGQVLER FFLGSQWLYR LGTPAGDLMV LSPNDGRDAL DEGHAAGIDW PAHCTRLLPA GEAVAA
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