Gene Vapar_0308 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0308 
Symbol 
ID7972657 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp329246 
End bp330316 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content70% 
IMG OID644790911 
ProductABC transporter related 
Protein accessionYP_002942237 
Protein GI239813327 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGTTCC TACGGCTCAC CGACCTGACC AAGTTCTACG GCGCCACGCG CGCCGTGTCG 
GCCATGAACC TCACGGTGGA GAAGGGCGAG TTCGTCTCGC TGCTCGGCCC CTCGGGCTGC
GGCAAGACCA CGACGCTGCA GATGATCGCG GGCTTCGAGC CGGTGTCGAG CGGGCGCATC
GAGCTCGCGG GCAAGGACAT CACGCATGCC AAGGCCAACA CGCGCGGCCT GGGCATCGTG
TTCCAGACCT ACGCGCTGTT CCCGCACATG ACGGTGGCCG ACAACGTGAG CTTCGGCCTC
GAGATGCGCA AGATGCCCAA GGCCGAGCGC GCGGAACGCG TGAAGCAGGC GCTCGCGCTG
GTGCACCTGG AAGCGCACGC CGCGCGCTAC CCGCGCGAGC TCTCGGGCGG CCAGCGCCAG
CGGGTGGCAC TGGCCCGCGC GCTCGTGATC GAGCCGCCGG TGCTGCTGCT GGACGAGCCG
CTTTCCAACC TCGACGCCAA GCTGCGCGAG GAAATGCAGT TCGAGCTGCG CCAGATCCAG
CGCAAGGTCG GCACCACCAC GGTGATGGTC ACGCACGACC AGAGCGAAGC CATGTCGATC
AGCGACCGCG TGGTGGTGAT GGAAGGCGGC TGCGCCACGC AGATCGACCA TCCGCACCGC
GTCTACGAGC ATCCGAGCAC GCGCTTCATC TCCACCTTCG TGGGCAAGGC CAACCTGCTG
GACGGGCGCG TCACGGCCAG CGGCGCGCGC AGCTGCCAGG TGGCGGTGGG CGCGCTCGCG
GTGGAAGTCG ACGACAGCGG CTACAAGCCG GGCGATGCGG TGCTGATGAG CGTGCGCCCC
GAAAAGCTGC AGCTGGTGGA GGCCGGCCGC GGCCGCCTCG ACGGCCAGGT GCTGGAGCGC
TTCTTCCTCG GCAGCCAGTG GCTCTATCGC CTGGGCACGC CCGCCGGCGA CCTGATGGTG
CTGAGCCCCA ACGACGGCCG CGACGCGCTC GACGAAGGCC ATGCCGCCGG CATCGACTGG
CCCGCGCATT GCACGCGCCT GCTGCCGGCC GGCGAGGCGG TGGCCGCATG A
 
Protein sequence
MSFLRLTDLT KFYGATRAVS AMNLTVEKGE FVSLLGPSGC GKTTTLQMIA GFEPVSSGRI 
ELAGKDITHA KANTRGLGIV FQTYALFPHM TVADNVSFGL EMRKMPKAER AERVKQALAL
VHLEAHAARY PRELSGGQRQ RVALARALVI EPPVLLLDEP LSNLDAKLRE EMQFELRQIQ
RKVGTTTVMV THDQSEAMSI SDRVVVMEGG CATQIDHPHR VYEHPSTRFI STFVGKANLL
DGRVTASGAR SCQVAVGALA VEVDDSGYKP GDAVLMSVRP EKLQLVEAGR GRLDGQVLER
FFLGSQWLYR LGTPAGDLMV LSPNDGRDAL DEGHAAGIDW PAHCTRLLPA GEAVAA