Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0275 |
Symbol | |
ID | 7972624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 296436 |
End bp | 297107 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644790878 |
Product | isochorismatase hydrolase |
Protein accession | YP_002942204 |
Protein GI | 239813294 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1335] Amidases related to nicotinamidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0199791 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCATAG AAACTGCCAA CCCCTTTCCC TACGACTTCG AGCTGAAGAA CACCGCGCTG GTCCTCATCG ACATGCAGCG CGACTTCATC GAGCCCGGCG GCTTCGGCGA AACGCTGGGC AACGATGTGT CTTTGCTCGA AGCGATCGTT CCGGCCACAA AGGCGGCGCT GCAGGCATGG CGGGAGGCCG GCGGCCTCGT GGTGCACACG CGCGAGGCGC ACAAGGCGGA TCTTTCCGAC TGCCCGCCCG CCAAGCGCAA CCGCGGCAAC CCGAGCCTGC GCATCGGCGA CCAAGGGCCG ATGGGCCGCA TCCTCGTCGC CGGCGAACCG GGCAACCAGA TCATCGATGC GCTGGCGCCC GTCGATGGCG AGATGGTCAT CGACAAGCCC GGCAAGGGCG CGTTCCATGC CACCGGCCTG CATGAGCTGC TGCAAGCGCG CGGCATCACG CACCTGCTGT TCGGCGGCGT CACCACCGAG GTCTGCGTGC AGACCAGCAT GCGCGAGGCC AACGACCGCG GCTACGACAG CCTGCTGCTC GAAGACTGCA CCGAGAGCTA CTTTCCGGCC TTCAAGGCGG CCACGCTCGA CATGGTCCGT GCGCAGGGCG CGATCGTGGG CTGGACCGCG CCGAGCAGCG CGCTGCGGGC GGTGCTCGGC CAAGGGCAAT GA
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Protein sequence | MRIETANPFP YDFELKNTAL VLIDMQRDFI EPGGFGETLG NDVSLLEAIV PATKAALQAW REAGGLVVHT REAHKADLSD CPPAKRNRGN PSLRIGDQGP MGRILVAGEP GNQIIDALAP VDGEMVIDKP GKGAFHATGL HELLQARGIT HLLFGGVTTE VCVQTSMREA NDRGYDSLLL EDCTESYFPA FKAATLDMVR AQGAIVGWTA PSSALRAVLG QGQ
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