| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0237 |
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| Symbol | |
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| ID | 7971446 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 253671 |
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| End bp | 255407 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644790840 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002942166 |
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| Protein GI | 239813256 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACTC CCACCGATCC GAACAGCAAG CGCTTTCGCT CCGCCACCAT CCGCGAGGGC
ACGATCCGCG CCACCACGCG CAGCTTCCTG CATGCGCTCG GCCAGGACGA CGAGGACATC
GCGCGCCCGC ACATCGGCGT GTTCCACACC GGCGGCGAGA TGAGCCCGTG CAACCTCAAC
CTGCGCGAGC AGGCGCAGCA TGCCAAGATC GGCATCTACG CGGGCGGCGG CACGCCGCAC
GAATGCCCGG TGGTGTCGGT GAGCGACGGG CTCACCATGG CGCATTCGGG CATGCGCTTC
TCGCTGATCT CGCGCGAGCT GATCGCCGAC AGCGTGGAGG CCTCGACGCG CGGCCACCAG
TGGGACGGCA TCTTCGCCAT CGGCGCCTGC GACAAGAACC TGCCGGGCCT GATGATGGGC
ATGGTGCGCT GCAACGTGCC GAGCGTGTTC GTGCATGGCG GCTCGGCTTT GCCCGGGCAG
ATGCCGGGCC CCGATGGCCG CGACCTCAAC GTGGTCGACA CCTACGAGAC CATCGGCAAG
GTGCTGGCCG GCACCGCCAC GCACGACGAG CTCGACGCCA TGAGCCGCGC CTGCCTGCCC
ACCGCGGGCG CCTGCGCGGG CCAGTTCACG GCCAACACCA TGGGCATGGT GTCGGAGGCG
CTGGGCCTGG CGCCCATGGG CTCGAGCATG GTGCCGGCGG TGTTCAGCGA ACGCGCGCCG
CTGATGCGCC GCGCCGCGAA GAACCTCATG AAGGCGGTGA TGGGCGACAG CCCCCTGCCG
CGCGACATCG TCACGCGCAA GGCGCTCGAG AACGCCTGCG CCGTGGTCTC GGCCACCGGC
GGCTCGACCA ACGCCGCGCT GCACCTGCCG GCCATCGCGC ACGAGGCCGG CATCAAGTTC
CACCTGGACG ACGTGGCCGA GGTCTTTGCG CGCACGCCGC TCATCGCCGA CCTGCGCCCG
GGCGGGCAGT ACCTGGCGCG CGACGTGTTC TACATCGGCG GCGCGGGCGT CATCCTGCGC
ACGCTGATGG AGCAGGGCTT CGTGCACGGC GATGCACTCA GCTTCACCGG CCGCACGCTG
GCCGAGGAAC TGGCCGATGC CGCGGCGCCC GACGGCCGCG TGGTGCGCGC GCCCGGCAAC
CCGATCACGC GCGACGGCGG GCTGGCCGTG CTCAAGGGCA ACCTCTGCCC TGACGGCGCG
CTGCTCAAGA CCGCGGGCCT CCAGACGCTG GTGCACCGCG GCCCGGCGCG CGTCTTCGAT
TCGGAGGAAC AAGCGCAGGC CGCCGTGCAG AACCGCCGCT ACGAAGCCGG CGACGTGATC
GTGATCCGCA ACGAGGGCCC CAAGGGCAGC CCCGGCATGC GCGAGATGCT GGGCATCACC
GCCCTGCTCT ACGGCCAGGG CATGGGCGAC AAGGTGGCGC TGCTGACCGA CGGGCGCTTC
TCGGGCGCCA CGCGCGGCCT GTGCATCGGC TATGCGGGGC CCGAAGCGGC CGACGGCGGG
CCGATTGCGG CGCTGCAGGA CGGCGACATG GTGGCCATCG ACGCGCGGCC CGGGGCGCGC
ACCATTTCGG TGGAACTGGC AGCGGAAGAA ATCGCGCTGC GGCTGTCCAG ACGTCAGGTA
AACGCGGGGG TGGCGCACCG CGGCTTGCTG GAAAAATACG CGCTCACCGT GCGCCCCGCC
CACCAGGGCG CCGTGACCCA TTCGGGCGCA GTCACCTGGC TGCGCGACGA GTCGTGA
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| Protein sequence | MTTPTDPNSK RFRSATIREG TIRATTRSFL HALGQDDEDI ARPHIGVFHT GGEMSPCNLN
LREQAQHAKI GIYAGGGTPH ECPVVSVSDG LTMAHSGMRF SLISRELIAD SVEASTRGHQ
WDGIFAIGAC DKNLPGLMMG MVRCNVPSVF VHGGSALPGQ MPGPDGRDLN VVDTYETIGK
VLAGTATHDE LDAMSRACLP TAGACAGQFT ANTMGMVSEA LGLAPMGSSM VPAVFSERAP
LMRRAAKNLM KAVMGDSPLP RDIVTRKALE NACAVVSATG GSTNAALHLP AIAHEAGIKF
HLDDVAEVFA RTPLIADLRP GGQYLARDVF YIGGAGVILR TLMEQGFVHG DALSFTGRTL
AEELADAAAP DGRVVRAPGN PITRDGGLAV LKGNLCPDGA LLKTAGLQTL VHRGPARVFD
SEEQAQAAVQ NRRYEAGDVI VIRNEGPKGS PGMREMLGIT ALLYGQGMGD KVALLTDGRF
SGATRGLCIG YAGPEAADGG PIAALQDGDM VAIDARPGAR TISVELAAEE IALRLSRRQV
NAGVAHRGLL EKYALTVRPA HQGAVTHSGA VTWLRDES
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