| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0117 |
|---|
| Symbol | |
|---|
| ID | 7971653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 117462 |
|---|
| End bp | 118370 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644790720 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002942046 |
|---|
| Protein GI | 239813136 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.476103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGCA AGATCCCGCC CCTGCAGACC CTCGTGTGCT TCGACGCCGC CGCGCGCCAC
GAGAGCTACA CCCGCGCCGC GCAGGAACTC GCGCTCACGC AGAGCGCGGT GTCGCGCCAG
ATCGGCACGC TCGAGGCCTT CCTGGGCGTG GCGCTGTTCC GCCGCACGCG CCACGGCGTG
GCGCTCACCG CGAGCGGCGC GGCCTATGCG CGCCAGATCA CCAAGCGGCT CGAGGCGATG
GAGCGCGACA CGCTCGACGC CATGGCGCAC CAGGGCGAAG GCGGCTCGCT CTCATTGGCG
GCGGTGCCCA CCTTTGCCAC GCGCTGGCTG ATGCCGCGGC TCAAGGGCTT TGCGGCGCTG
CAGCCCGACG TGGTGGTGCA CATCGAGACG CGCACCCGGC CTTTCCTGTT TGCCGACGCG
GAGTTCGACG CCGCGCTGTA TGCCGGCACG CCCGCGCAGG TCGAGAACTG GGCCGGCACG
CGCGCGCTCA TGCTGATGCA CGAGGACGTG GTGCCGGTGT GCAGCCCCTC GCTGTTGCTG
CGCGGCAAGG CGGTCGCGCC CGCGGCCATC GCGCAGATGC CGCTCCTGCA GCAGAGCACG
CGGCCCGACG GCTGGCGCCA GTGGTTCGAC GCGCAGCAGG TCGATGCACC CAATGCACGC
GGCGGGCCGC GCTACGAGCT CTTTTCCATC TTGGCCGCGG CCGCCTCGCA CGGCCTGGGC
GTGGCGCTGA TGCCCACCAT GCTGGTGGCC GACGAACTCG CGCGCGGCGA ACTCGTGGTG
GCCTGCGCGC GGCCGCTGTC GGGCGAGCGC AACTACTACC TCGTGACGCC CGAGCGCGCC
GACCAGCGGC CGCTGCTGAA GTTCTTCAGC GACTGGCTGC TGGCCGAGGC GCAGCGCAGC
GCCGTCTAA
|
|---|
| Protein sequence | MRRKIPPLQT LVCFDAAARH ESYTRAAQEL ALTQSAVSRQ IGTLEAFLGV ALFRRTRHGV
ALTASGAAYA RQITKRLEAM ERDTLDAMAH QGEGGSLSLA AVPTFATRWL MPRLKGFAAL
QPDVVVHIET RTRPFLFADA EFDAALYAGT PAQVENWAGT RALMLMHEDV VPVCSPSLLL
RGKAVAPAAI AQMPLLQQST RPDGWRQWFD AQQVDAPNAR GGPRYELFSI LAAAASHGLG
VALMPTMLVA DELARGELVV ACARPLSGER NYYLVTPERA DQRPLLKFFS DWLLAEAQRS
AV
|
|---|
| |