| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0113 |
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| Symbol | |
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| ID | 7971649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 114042 |
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| End bp | 114701 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644790716 |
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| Product | Tripartite ATP-independent periplasmic transporter DctQ component |
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| Protein accession | YP_002942042 |
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| Protein GI | 239813132 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.139035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGC GGCCGCAGCC CACCGCCGCA TCGCCGGAAG AAGCGCCGGC CGCGCCGCGG
CACGCCAGCT TCAAGACGCG CGTGGAGACG GTGCTGGCCA CCGTCTTCGG GGCGATCTTC
CTTGGCCTGT CGGTCATCGT GACCGTCGAG ACCGCCGCGC GCAAGCTGTT CAACATCTCG
CTGCAGGGCG CGGACGAGCT CGGCGGCTAT GCGCTCGCGG TGGGCTCGAC CATTGCCTTC
AGCCTCGCGC TCATGGGGCG CAACCACATC CGCGTCGACG TGTTCCACGA GAAGTTCCCG
GCCCGCGTGC AGGCGCTGCT GAACTGGATC TCGGCGGTGT CGCTGGCCGC GCTCGCGGTG
TTCATCGGCT GGGTGGCGTT CAAGGTGATC GGCGACACCA TGGCCTACCG CAGCACCGCG
CAGACGCCGT GGGCCACGCC GCTGATCATT CCGCAGGGCG TCTGGTATGC GGGGCTCGTG
GTCTTCGCGC TGGTGGCCTG CGGGCTCGCG CTGCGCGCCA CCCAGCTGCT GCTGCGCGGC
GACATCGCGG CGCTGAACAC CGACTTCCAT CCCAAGAGCG CGAAGGAAGA GCTCAAGGAA
GAGCTCGACG ACCTCGCGGT GCGCCAGGCC CCGCAGCCCG GCGAAGGAGG CAGGCCATGA
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| Protein sequence | MSERPQPTAA SPEEAPAAPR HASFKTRVET VLATVFGAIF LGLSVIVTVE TAARKLFNIS
LQGADELGGY ALAVGSTIAF SLALMGRNHI RVDVFHEKFP ARVQALLNWI SAVSLAALAV
FIGWVAFKVI GDTMAYRSTA QTPWATPLII PQGVWYAGLV VFALVACGLA LRATQLLLRG
DIAALNTDFH PKSAKEELKE ELDDLAVRQA PQPGEGGRP
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