| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0111 |
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| Symbol | |
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| ID | 7971647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 111348 |
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| End bp | 112727 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 644790714 |
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| Product | Amidase |
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| Protein accession | YP_002942040 |
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| Protein GI | 239813130 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00542197 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCAC TCTGGCAACT CACGGCGGCC CAGCTCGCCG AAGGCTTTGG CGCCGGCGCC
TTCACGCCGG AGCAGGCGCT CGCGGCCTGC CTGGCGCGCA CGGCCGAGGT GAACCCGCGG
CTCAATGCGC TGGTGGTGCT CGATGCCGAA GGCGCGGCCG AGGCCGCGGC GCAAAGCACC
GCGCGCTGGC GTTCGGGCCG CGCGCTAGGC GCGCTCGACG GCGTGCCCGC CACCATCAAG
GACAACCTGC AGGTGCGCGG CCTGCCCACG CACTGGGGCA GCCGCGCGCT GGCCGGCTTT
GTCGCCGAGC GCGACGAGCT GCCGGTGGCG CGGCTGCGTG AAGCCGGCGC GGTGATCTTC
GGCAAGACCA ACGTGCCCGA GTTCACGATG CAGGGCTACA CCGCCAACCC GGTCTTCGGG
CCCACCGGCA ATCCGTGGAA CCCGGCGCTC ACGCCCGGCG GCTCCTCGGG CGGCGCGGTG
GCACTGGTGG CCGCGGGCGG CTGCCCGATC GCGCTGGGCA CCGATGGCGG CGGCTCCATC
CGCCGGCCCG CCTCGCACAC CAACCTCGTC GGGCTCAAGC CTTCGCGCGG CCGCGTGCGG
CGCGGCAATG GCCTGCCGCC GATCTTCCTG GACTTCGAGG TGGTGGGGCC GATGGCACGC
TGCGTGGACG ACGTGGCCGC GGTCATGCGG GCGATCGCGC CGCGCGCGGC GGCCGATGCG
CCGCACAAAG CCAAGGCCGC GCGCATCCTC TACCTGCCGC GCTTCGCGGA CCACCCGGTG
GACCCGCGCA TCGCGCGGCT GGTGGATGCC GCGGCCGAGA AGCTGGCCGC GCTCGGGCAC
GAGGTCACGA CGCTGCCGCG CTTCGAACTG GCCGAGGCGG TGAACCAGCG CTGGCCGCTG
CTCGCGCAGG TAGGGCTGGC CTGGCTGGTG GACCATCCGC GCGAACTCTG GCCGCGGCCC
TTCGATCCCG CGCTGTTCGG CCCCGCGATG CAGGCCAACA CCGGGACCGG CCGCGCCGCC
TCGGCGCGCG AGCTGTTCGA GCTGCTGTTC GAGGCCGAGC GCCTGCGCAG CGAACTCGCG
GGCCTGTTCG AGCAGCACGA CTTTTTGCTG ACCCCCGCGA CCGCGGCGCT GCCCTGGCCC
GCGGCCGACA CCCATCCGCC GCGCATCGAT GGCCGCGAGG TCGGCCCGCG CGGCCATGCG
GTGTTCGCGG GCTTCGTCAA CGCCCTGGGC CTGCCCGCGA TCGCGCTGCC CTGCGGCTTT
GCCGAAGGCC TGCCGGTGGG GCTGCAGCTG GTCGCGCGCG AAGGCGGCGA CGACGCGCTG
CTGGCGCTGG CCCGCGATTT CGAACGCGCC CATCCGTGGC AGCGCTTTCC CGCCCTGTGA
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| Protein sequence | MKALWQLTAA QLAEGFGAGA FTPEQALAAC LARTAEVNPR LNALVVLDAE GAAEAAAQST
ARWRSGRALG ALDGVPATIK DNLQVRGLPT HWGSRALAGF VAERDELPVA RLREAGAVIF
GKTNVPEFTM QGYTANPVFG PTGNPWNPAL TPGGSSGGAV ALVAAGGCPI ALGTDGGGSI
RRPASHTNLV GLKPSRGRVR RGNGLPPIFL DFEVVGPMAR CVDDVAAVMR AIAPRAAADA
PHKAKAARIL YLPRFADHPV DPRIARLVDA AAEKLAALGH EVTTLPRFEL AEAVNQRWPL
LAQVGLAWLV DHPRELWPRP FDPALFGPAM QANTGTGRAA SARELFELLF EAERLRSELA
GLFEQHDFLL TPATAALPWP AADTHPPRID GREVGPRGHA VFAGFVNALG LPAIALPCGF
AEGLPVGLQL VAREGGDDAL LALARDFERA HPWQRFPAL
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