| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0098 |
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| Symbol | |
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| ID | 7971633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 97818 |
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| End bp | 98279 |
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| Gene Length | 462 bp |
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| Protein Length | 153 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644790700 |
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| Product | transcriptional regulator, BadM/Rrf2 family |
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| Protein accession | YP_002942027 |
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| Protein GI | 239813117 |
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| COG category | [K] Transcription |
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| COG ID | [COG1959] Predicted transcriptional regulator |
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| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.35302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGAG ACAGCAAGCT TTCAGGTGTT CTCCACGCAC TGCTGCACAT GGCCGAGATG
GAGGGGCCCG TCACCTCCGA ATCGCTGGCC ATGGCCATGC AGACCCATCC CGTCGTGGTG
CGCCGGGTCA TGGCAGGCCT GCGCGAGGCG GGCTTCGTGA GTTCGGCCAA GGGCCATGGC
GGCGGCTGGG TGCTGTCGTG CCCGCTCGAT GCCGTGACGC TCGGCGACAT CCACCAGGCG
GTGGGATCTC CGGCGCTGCT GGCCATGGGC AACCGCACCG AGAGCCCGGG CTGCATCGTC
GAGCAGGCCG TGAATGCGGC GCTCGACGGC GCCTGCCGCG AGGCCGAGGC CCTGCTGCTC
GAGCGTTTCA ACAGCATCAC GCTGGCCGAT CTTTCCAGGG ATTTTCATCG CCGCATGACG
GGCGGCGGCT TTACTCGCAA GGACATCGAA CATGCACTAT GA
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| Protein sequence | MKRDSKLSGV LHALLHMAEM EGPVTSESLA MAMQTHPVVV RRVMAGLREA GFVSSAKGHG
GGWVLSCPLD AVTLGDIHQA VGSPALLAMG NRTESPGCIV EQAVNAALDG ACREAEALLL
ERFNSITLAD LSRDFHRRMT GGGFTRKDIE HAL
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