Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_0085 |
Symbol | |
ID | 7971620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 82961 |
End bp | 83935 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644790687 |
Product | inner-membrane translocator |
Protein accession | YP_002942014 |
Protein GI | 239813104 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGCAGG TCCACACTTC TTCCATGCGG CGCGGCGCGT TCCTCGTGCC GGTGGCCTGC GCCATTGCCA TCGGCGTGCT CGGCCCGCTC ATGGGCAACT ACGTCTCGGA CTTCGTCGTC AAGGTGATGA TCCTGTCGAT CTTCGCGCTG AGCCTCGAAC TGCTGGTCGG CATGACGGGG CTCGTGAGCC TGGGCCACGC GGCGTTCTAC GGCATCGGCG CCTACGTCAC GGTGCTGGCC TCGGGCAGCG AGGGCGGCAA CCTCGCGCTG CTGCTGCCGC TGGCCATGGG CGCGGCGGCG CTCTACGCAT TGTTCGTGGG CGCGCTGAGC CTGCGCACGC GCGGCGTGTA CTTCATCATG GTGACGCTGG CCTTCGCGCA GATGGCTTTT TTCGTGTTCC ACGACACCAA GGTGGGCGGC GGCAGCGACG GCATCTACAT GTACGTGCGG CCGGCCATCG GCAAGCTCGA CATGGAGAAC CGCATGGTGC TGTTCTACAT CGTGCTCGCA TCGCTGGTGT TCACCTACGG CCTTTTGGCG CTGGTGCGGC GCTCGCGCTT CGGCGCGGCG CTCGCGGGCA TCCGCGTGAA CGAGCAGCGC ATGCGCGCGG CGGGCTTTCC GGTGTACGGC TACAAGCTCG CGGCCTTCGT GCTGGCGGGC GCGCTGGCCG GGCTCGCGGG CTTTCTGCTG GCCTCGCGCG ACGGCGTGGT CAACCCCGAG CTGATGGCCT GGCACAACTC GGGCGAGGTG CTGCTGATGG TGATCCTCGG CGGCCTCGGC CATCTGCGCG GCGCTGTCAT CGGCGCCATC GCGTTCACGC TGCTGAAGGA AATCTTCTCG ACGCACGCCG TGATGGGGCC GCTCGCGGAC CACTGGCAGC TGACGCTGGG CATCGCGATC ATCGTGTTCG TGGCGTGGCT GCCCAAGGGG CTGATCGGCC TGGCGAAGCG GCTGTCGCCG AAGGGGGCTG CATGA
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Protein sequence | MMQVHTSSMR RGAFLVPVAC AIAIGVLGPL MGNYVSDFVV KVMILSIFAL SLELLVGMTG LVSLGHAAFY GIGAYVTVLA SGSEGGNLAL LLPLAMGAAA LYALFVGALS LRTRGVYFIM VTLAFAQMAF FVFHDTKVGG GSDGIYMYVR PAIGKLDMEN RMVLFYIVLA SLVFTYGLLA LVRRSRFGAA LAGIRVNEQR MRAAGFPVYG YKLAAFVLAG ALAGLAGFLL ASRDGVVNPE LMAWHNSGEV LLMVILGGLG HLRGAVIGAI AFTLLKEIFS THAVMGPLAD HWQLTLGIAI IVFVAWLPKG LIGLAKRLSP KGAA
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