Gene Vapar_0062 details

Gene Information

• Locus tag: Vapar_0062
• ID: 7974020
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 59665
• End bp: 60267
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644790664
• Product: transcriptional regulator, TetR family
• Protein accession: YP_002941991
• Protein GI: 239813081

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGCCA AGACCCAGAA AAGCGAACTC ACCCGCGCCG CCATCGTCGG CGCGGCGATG 
GACCTTGCGC TGGCCGAAGG CCTGGAGGCC ATCACGCTGC AGGCCGTGGC CAGCCGCCTG 
GCGCTCTCCA AGAGCGGCGT GTTCTCGCGC GTGGGTTCGC GCGAGGCGCT GCAGAAGGCC 
GTGATCGAGG AATACGGCCG CCGCTTCCTG GCCGACGTGT TCGTGCCGGC CATGCAAAAG 
CCCAAGGGCC TTGCGCGGCT CGACGACATC GTCGGGCGCT GGATTGCCCG CACCCGCGAC 
ATCGAGGCCG AAACCGGCTG CATCTACATG GCGGGCGCCT TCGAATACGA CGACCGCGAA 
GGCGAACTGC GCGACCTGCT GTTCGGCGAG ATCACGCGCT GGCGCGCCGC GCTGCGCCGC 
ACGGTGCTCC AGGCGGTGGA AACCGGCGAG CTGCGGGCCG ACACCGACCC GGCGCAGCTG 
GTCAGCGAAT TGAACGGCCT CATCATGGGC CTGCTGCACG ACGCGCGCTT CCTGCGCGAC 
CCCCAGGCCG CCGATCGCGC CACGCAGACC TGGCAGCGGC TTCTTTCGAG CTACCGCGCC 
TGA 

 

Protein sequence

MDAKTQKSEL TRAAIVGAAM DLALAEGLEA ITLQAVASRL ALSKSGVFSR VGSREALQKA 
VIEEYGRRFL ADVFVPAMQK PKGLARLDDI VGRWIARTRD IEAETGCIYM AGAFEYDDRE 
GELRDLLFGE ITRWRAALRR TVLQAVETGE LRADTDPAQL VSELNGLIMG LLHDARFLRD 
PQAADRATQT WQRLLSSYRA