Gene Vapar_0047 details

Gene Information

• Locus tag: Vapar_0047
• ID: 7974005
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 48695
• End bp: 49309
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644790649
• Product: Lysine exporter protein (LYSE/YGGA)
• Protein accession: YP_002941976
• Protein GI: 239813066
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGGCA TTGCTGACTA CGGCGCATTC GTCGCCGCCA TCGTCCTCTT TCTCCTGATT 
CCCGGTCCGG GCAACCTCGC GTTGATCACC TCGACCAGCA AAGGCGGAAT CCGTGGCGGC 
CTGGCGGCCA CCTTGGGCGT GATCGTCGGC GACCAGTTCC TGATGTGGGC GGCGGTGGCG 
GGCGTGGCGG CCGTGCTGGC GGCCTATCCG GCCGCATTCA AGGCGGTGCA GTGGCTGGGC 
GCCGTCTACC TGGCATGGTT GGGCGCCAAG ATGCTGCTGG CCAAGCCCGG CGCGGCACCC 
ATCCTCAACA TCCGCCCCAG CCACTTCATG CGCCAGGCGC TGGCCATCAC CTTGCTGAAT 
CCCAAGGCCA TCGTGTTCTA CATGGCCTTC TTTCCGCTGT TCGTCGACCC TGCGCGCCAC 
CAGGGCGTGG TCACTTTCGG TGCCATGGCG GTGACAATCG CCGCGCTGAC CTTCCTCTAC 
GGCCTCACGT CGACGCTGCT CACGCACTTC CTGGCGGAGC GCATCCGCGC CAATCCGCGC 
ATTTCGGGCA GGCTCGAAAA GCTCGCGGGC GTCTTCCTGA TCGCCTTCGG CATCAAGCTC 
GCCATTTCCC GCTGA 

 

Protein sequence

MFGIADYGAF VAAIVLFLLI PGPGNLALIT STSKGGIRGG LAATLGVIVG DQFLMWAAVA 
GVAAVLAAYP AAFKAVQWLG AVYLAWLGAK MLLAKPGAAP ILNIRPSHFM RQALAITLLN 
PKAIVFYMAF FPLFVDPARH QGVVTFGAMA VTIAALTFLY GLTSTLLTHF LAERIRANPR 
ISGRLEKLAG VFLIAFGIKL AISR