| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_3996 |
|---|
| Symbol | |
|---|
| ID | 7861094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 4420963 |
|---|
| End bp | 4422381 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643868099 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002883999 |
|---|
| Protein GI | 229822473 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0734403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.950841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAGA GCATCACGAT CCACCGGCGT ACGATCCTGC AGGCCGGTAT CGCTACCGCG
GCGGTGTTCC CGCTGCTTGC CGCCTGTGCC ACCGGCGGTG GCAGCGGCGA CGACGACGAG
GAGACCACCG AACCCACCGG TGACGTCGAT CCCGACAACC CGTTCAACGT CCCTGCCGAC
GTCGAGGTCG ACACCGTCAT CTTCGACGGC GGTTACGGCA TCGACTACGT CGAGTTCGCC
GCCGACCTGT TCGAGCAGCT CCACGAGGGC TCGTCGGTCG CCGTGGCGCC ATCCACCCAG
ATCGCCACGG AGATGCAGCC GCGGTTCGTC GGCGGCAACC CGCCGGACCT CATCGACAAC
TCCGGCGCCC AGGCGATGGG CTTCAACACG ATCCTCGAGC AGCTCGAGGA CCTGAACGAC
GTGTTCGACG CCCCCAACCT CGAGGGTGAG ATCATCCGGG ACACGGTGTA CGCCGGCTCG
GAGCTTCCCG GCACGTTCAA CGACAAGTTC GTGGCCATCA ACTACGTGCT CACCGTGTAC
GGCGTCTGGT ACTCCGGCTC GCTGTTCGAC GAGAACGGCT GGACGCCGCC CACCACGTGG
GACGAGGCGA AGGAGCTCGG CGCAGCTGCG GCCGAGCAGG ACCTGAAGCT GTTCGTCTGG
GGTCAGGAGG CGGCGACGTA CTACCAGACC CTCGCCGTCG ACTCCGCGAT CATCGAGGCC
GGCGACGAGC TTCGCCTCGC GCTCGAGAAC CTGCAGCCCG ACTGCTGGTC GCACGAGGCC
CTGCAGGACG TGTTCGCCGC GCTCAAGGAG ATCGTCGACC TCGGGTACTT CGTCCCCGGC
GGCTCCGGCA CGCAGTTCAC TGCCGCTCAG GCGCGGTGGA GCAACGACCG GCAGGCGTTG
CTGTACCCGT CCGGGTCCTG GATCGAGAAC GAGATGAACA AGGAGAACCA GGTCGCCGAG
GGCTTCGAGA TGAAGGGTGT CGCCACGTGG CCGCTGTCGA GCAGCTCGGC CATGCCAGCC
GGGACGCTGC ACTCGACGGC CGGCGAACCG TTCGTCGTGC CGACCGACGC GAACAGCGTC
GAGTCCGGCA AGGAGATGAT CCGGATCATG CTGTCGCGTG AGGCGGCGGA GAACTTCGCG
AGGTCGAAGC TCGCTCCGAC GATCGTCATG GACACGGTGC CGGAGGACGG CTTCGGGTCG
ACGGCGCTCG TCTCCCAGCA GGAGATGCTC GCTGCCGCCG GCGAGAACAA GTTCACGTGG
AACTTCGTCG GCACGTACGG CATGAACCAG GAGCAGCTCG TCATCTGGAA CTCGTTCCTC
GACGGCGCGA AGTCTGTGGA CGACCTCACG TCCGAGCTGC AGGCCATCAC GGACCGCATC
CGCGAGGACG ACTCCATCGA GAAGATCGAA GTGGTATGA
|
|---|
| Protein sequence | MSESITIHRR TILQAGIATA AVFPLLAACA TGGGSGDDDE ETTEPTGDVD PDNPFNVPAD
VEVDTVIFDG GYGIDYVEFA ADLFEQLHEG SSVAVAPSTQ IATEMQPRFV GGNPPDLIDN
SGAQAMGFNT ILEQLEDLND VFDAPNLEGE IIRDTVYAGS ELPGTFNDKF VAINYVLTVY
GVWYSGSLFD ENGWTPPTTW DEAKELGAAA AEQDLKLFVW GQEAATYYQT LAVDSAIIEA
GDELRLALEN LQPDCWSHEA LQDVFAALKE IVDLGYFVPG GSGTQFTAAQ ARWSNDRQAL
LYPSGSWIEN EMNKENQVAE GFEMKGVATW PLSSSSAMPA GTLHSTAGEP FVVPTDANSV
ESGKEMIRIM LSREAAENFA RSKLAPTIVM DTVPEDGFGS TALVSQQEML AAAGENKFTW
NFVGTYGMNQ EQLVIWNSFL DGAKSVDDLT SELQAITDRI REDDSIEKIE VV
|
|---|
| |