Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_3625 |
Symbol | |
ID | 7860967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | + |
Start bp | 4035620 |
End bp | 4037683 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643867728 |
Product | short chain dehydrogenase |
Protein accession | YP_002883629 |
Protein GI | 229822103 |
COG category | [S] Function unknown |
COG ID | [COG3347] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000228222 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0356352 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACGG CGCAGCCCGC CGACACCGTG CCCGCGCCCG TCGCGGAGCT CGTGGCCCGC AGCAACCGGC TCGGCGCGGA CCCGACGACC ACGAACTACG GGGGTGGGAA CACGTCCGCC AAGGGGACGG CGTCGGACCC CGTGACGGGC GAGGACGTCG AGCTCCTCTG GGTGAAGGGC TCGGGCGGCG ACCTGGGCAC GCTCACCGCC GGCGGGCTCG CGGTGCTGCG GCTGGATCGC GTCCGCGCGC TGACCGGGGT GTACCCGGGC GTCGAGCGCG AGGACGAGAT GGTCGCAGCG TTCGACTACT GCCTGCACGG CAAGGGCGGC GCGGCGCCGA GCATCGACAC GGCGATGCAC GCTCTGGTCG ACGCGCCGCA CGTCGACCAC CTCCACCCGG ACGCGGGCAT CGCGATCGCG ACGGCTGCCG ACGGCGAGCG CCTCACCGCG GAGATCTTCG GCTCCCGCGT GGTGTGGGTG CCGTGGCGCC GACCCGGGTT CCAGCTGGGG CTCGACATCG CCGCGATCCA GCGCGAGAAC CCGGACGCCG TGGGGTGCGT CCTCGGCGGC CACGGGATCA CCGCGTGGGG CACCACGAGC GATGAGGCGG AGCAGCGTTC GCTCGAGATC ATCCGCACCG CTCAGGCGTA CCTCGACTCG CACGGCGCCG CTGAGCCGTT CGGCCCCGTG CGCGAGGGGT ACCAGGCGCT GCCGGCGCCG GAGCGCCGGG CGAAGGCTGC GGCCCTGGCC CCGCTGCTGC GCGGGCTGGC GTCCACCGAT GCCCCGCAGG TGGGCCACTT CACCGACTCC GACGACGTCC TGGACTTCCT CGCCCGCGCC GAGATGCCGC GGCTCGCCGC GCTCGGCACG AGCTGCCCCG ACCACTTCTT GCGCACGAAG GTCCGCCCCC TGGTGCTCGA CCTGCCCGCC GACGCGAGCA TCGACGACGC CGTCGTCGTG CGCCTGCGCG AGCTGCACGC CGCCTACCGC GATGACTATC GCGACTACTA CGAGCGGTAC GCGGAGCCGG ACTCCCCGGC GATGCGCGGC GCCGACCCGG CGATCGTCCT CGTGCCGGGC GTCGGGATGT TCTCCTACGG CCGCGACAAG CAGACCGCGC GGGTGGCCGG CGAGTACTAC GTCAACGCGA TCCACGTGAT GCACGGCGCC GAGGCCGTGT CCGCCTATGC CCCGATCGAC GAGTCCGAGA AGTTCCGCAT CGAGTACTGG GCGCTGGAGG AGGCGAAGCT CGCGCGCCGT CCGAAGCCCA AGCCGCTGGC GACGCGCATC GCTCTCGTCA CGGGTGCGGC GTCGGGCATC GGCAAGGCGA TCGCGACACG CCTCGCCGCG GAAGGGGCGT GCGTCGTCGT CGCCGATCTC GACGCCGAGA AGGCGCGCGA GGCGGCGGCT GAGATCGGCG GGGCGGACGT CGCGATCGGC GTCGCCGCCG ACGTGTCCGA CTCCGCTGCG GTGCGGGCCG CCGTGGACGA AGCGGTCCTC GCGTTCGGCG GGCTCGACCT CGTGGTCAAC AACGCCGGCC TCTCGATCTC CAAGCCGCTG CTCGAGACGA CCGAGCGCGA CTGGGATCTG CAGCACGACG TCATGGCCAA GGGCTCGTTC CTCGTCTCCC AGGCGGCCGC GCGCGTGATG ATCGAGGCGG GCCTGGGCGG CGACATCGTG TACATCGCCT CGAAGAACGC CGTGTTCGCC GGTCCGAACA ACGTGGCGTA CTCCGCGACG AAGGCCGACC AGGCGCACCA GGTCAGGCTC CTCGCCGCCG AGCTCGGTAC GCACGGCATC CGCGTCAACG GCATCAACCC CGACGGCGTC GTGCGCGGGT CCGGCATCTT CGCCGGCGGG TGGGGGGCGC AGCGGGCCGC GACCTACGGG ATCCCGGAGT CCGAGCTGGG CGCGTTCTAC GCCAAACGCA CGTTGCTCGG GCACGAGGTG CTGCCCGAGC ACGTCGCGGC CGCCGTCGTC GCCCTGTGCG GTGGGGACCT CACGCAGACC ACCGGGCTGC ACGTCCCGGT CGACTCCGGC GTCGCCGCCG CGTTCCTGCG CTGA
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Protein sequence | MTTAQPADTV PAPVAELVAR SNRLGADPTT TNYGGGNTSA KGTASDPVTG EDVELLWVKG SGGDLGTLTA GGLAVLRLDR VRALTGVYPG VEREDEMVAA FDYCLHGKGG AAPSIDTAMH ALVDAPHVDH LHPDAGIAIA TAADGERLTA EIFGSRVVWV PWRRPGFQLG LDIAAIQREN PDAVGCVLGG HGITAWGTTS DEAEQRSLEI IRTAQAYLDS HGAAEPFGPV REGYQALPAP ERRAKAAALA PLLRGLASTD APQVGHFTDS DDVLDFLARA EMPRLAALGT SCPDHFLRTK VRPLVLDLPA DASIDDAVVV RLRELHAAYR DDYRDYYERY AEPDSPAMRG ADPAIVLVPG VGMFSYGRDK QTARVAGEYY VNAIHVMHGA EAVSAYAPID ESEKFRIEYW ALEEAKLARR PKPKPLATRI ALVTGAASGI GKAIATRLAA EGACVVVADL DAEKAREAAA EIGGADVAIG VAADVSDSAA VRAAVDEAVL AFGGLDLVVN NAGLSISKPL LETTERDWDL QHDVMAKGSF LVSQAAARVM IEAGLGGDIV YIASKNAVFA GPNNVAYSAT KADQAHQVRL LAAELGTHGI RVNGINPDGV VRGSGIFAGG WGAQRAATYG IPESELGAFY AKRTLLGHEV LPEHVAAAVV ALCGGDLTQT TGLHVPVDSG VAAAFLR
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