Gene Bcav_3300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3300 
Symbol 
ID7861772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand+ 
Start bp3657290 
End bp3657934 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content74% 
IMG OID643867400 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002883305 
Protein GI229821779 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.513465 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00580905 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGCCGCCAC CTCGCCCGCT GAGCAGGGAT CGCGTGCTCC AGGCCGCGAT CCGCGTCGCC 
GACCGCGGCG GCGTCCAGGC GATCACCATG CGGAAGGTGG CACAGGAGCT CGGCGTCGAG 
GCGATGTCGC TGTACCACCA CGTGCCGGGC AAGGAGGCGC TGCTCGACGG CGTCGTGGAC 
ACGGTCTTCG CGGCGATCGA CCTGCCCGCC ACCGGCGGCG ACTGGCGCGA CGCGATCCGC 
GCGCGGGCCG CCTCCGCCCG CACGGTGCTG ACGGCGCACA GCTGGGCCCT CGGGCTCCTG 
GACTCGCGTC GCGACCCGGG ACCGGCGACG CTGCGCCACC ACGACGCCGC CTTGGGCGTC 
CTGCGCGGCG CTGGCTTCGA TCTCCCGATG GCCGCGCACG CCATCTCGCT CATCGACAGC 
TACGTCAACG GGTGGGTCCT CGCCGAGGCG AACCTGCCGG TGATGACGCC GGGCGACGTC 
GAGGACGTGG CCGGTGGCAT CCTCGAGCAC CTGCCGGCGG ACGAGCTGCC CCACCTCACG 
GAGATGATCG TCGACCACGC CCTGCGGCCG GGCTACGACC ACACGGCCGA GTTCGGCTGG 
GGCCTCGACC TCGTGCTGGA CGCGCTCGAG GAGCGCCGGA CGTAG
 
Protein sequence
MPPPRPLSRD RVLQAAIRVA DRGGVQAITM RKVAQELGVE AMSLYHHVPG KEALLDGVVD 
TVFAAIDLPA TGGDWRDAIR ARAASARTVL TAHSWALGLL DSRRDPGPAT LRHHDAALGV 
LRGAGFDLPM AAHAISLIDS YVNGWVLAEA NLPVMTPGDV EDVAGGILEH LPADELPHLT 
EMIVDHALRP GYDHTAEFGW GLDLVLDALE ERRT